23 items (Esox lucius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSELUP00000000536	Usher syndrome 2A (autosomal recessive, mild). (5044 aa)
	ENSELUP00000001668	Netrin 4. (558 aa)
	lamc3	Laminin, gamma 3. (1642 aa)
	LOC105030506	Vav 3 guanine nucleotide exchange factor b. (494 aa)
	ntn1	Netrin 1a. (603 aa)
	NTN4	Netrin 4. (733 aa)
	LOC105030962	Netrin 2. (638 aa)
	LOC105013164	Netrin 1b. (600 aa)
	ENSELUP00000009981	Laminin, beta 2 (laminin S). (1469 aa)
	LOC105007961	Laminin, beta 1b. (1821 aa)
	ntng2	Netrin g2a. (553 aa)
	LOC105018082	Laminin, beta 4. (1824 aa)
	LAMA3	Laminin subunit alpha 3. (2434 aa)
	ENSELUP00000018320	Laminin, alpha 5. (3613 aa)
	lama1	Laminin, alpha 1. (2953 aa)
	LOC105031491	Netrin 5. (858 aa)
	LAMA2	Laminin subunit alpha 2. (3146 aa)
	NTNG2	Netrin G2. (555 aa)
	ntng1	Netrin g1a. (566 aa)
	LOC105017322	Si:dkey-202e22.2. (608 aa)
	lamc1	Laminin, gamma 1. (1594 aa)
	LOC105027771	Laminin, beta 2-like. (1840 aa)
	LAMB1	Laminin, beta 1a. (1661 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSELUP00000000536	ENSELUP00000009981	ENSELUP00000000536	ENSELUP00000009981	Usher syndrome 2A (autosomal recessive, mild).	Laminin, beta 2 (laminin S).	0.456
ENSELUP00000000536	LAMB1	ENSELUP00000000536	ENSELUP00000037357	Usher syndrome 2A (autosomal recessive, mild).	Laminin, beta 1a.	0.456
ENSELUP00000000536	LOC105007961	ENSELUP00000000536	ENSELUP00000013280	Usher syndrome 2A (autosomal recessive, mild).	Laminin, beta 1b.	0.456
ENSELUP00000000536	LOC105027771	ENSELUP00000000536	ENSELUP00000032515	Usher syndrome 2A (autosomal recessive, mild).	Laminin, beta 2-like.	0.456
ENSELUP00000000536	lamc1	ENSELUP00000000536	ENSELUP00000032492	Usher syndrome 2A (autosomal recessive, mild).	Laminin, gamma 1.	0.759
ENSELUP00000000536	lamc3	ENSELUP00000000536	ENSELUP00000002360	Usher syndrome 2A (autosomal recessive, mild).	Laminin, gamma 3.	0.759
ENSELUP00000009981	ENSELUP00000000536	ENSELUP00000009981	ENSELUP00000000536	Laminin, beta 2 (laminin S).	Usher syndrome 2A (autosomal recessive, mild).	0.456
ENSELUP00000009981	ENSELUP00000018320	ENSELUP00000009981	ENSELUP00000018320	Laminin, beta 2 (laminin S).	Laminin, alpha 5.	0.585
ENSELUP00000009981	LAMA2	ENSELUP00000009981	ENSELUP00000020397	Laminin, beta 2 (laminin S).	Laminin subunit alpha 2.	0.736
ENSELUP00000009981	LAMA3	ENSELUP00000009981	ENSELUP00000018189	Laminin, beta 2 (laminin S).	Laminin subunit alpha 3.	0.585
ENSELUP00000009981	lama1	ENSELUP00000009981	ENSELUP00000019161	Laminin, beta 2 (laminin S).	Laminin, alpha 1.	0.736
ENSELUP00000009981	lamc1	ENSELUP00000009981	ENSELUP00000032492	Laminin, beta 2 (laminin S).	Laminin, gamma 1.	0.707
ENSELUP00000009981	lamc3	ENSELUP00000009981	ENSELUP00000002360	Laminin, beta 2 (laminin S).	Laminin, gamma 3.	0.707
ENSELUP00000018320	ENSELUP00000009981	ENSELUP00000018320	ENSELUP00000009981	Laminin, alpha 5.	Laminin, beta 2 (laminin S).	0.585
ENSELUP00000018320	LAMB1	ENSELUP00000018320	ENSELUP00000037357	Laminin, alpha 5.	Laminin, beta 1a.	0.585
ENSELUP00000018320	LOC105007961	ENSELUP00000018320	ENSELUP00000013280	Laminin, alpha 5.	Laminin, beta 1b.	0.585
ENSELUP00000018320	LOC105027771	ENSELUP00000018320	ENSELUP00000032515	Laminin, alpha 5.	Laminin, beta 2-like.	0.468
ENSELUP00000018320	lamc1	ENSELUP00000018320	ENSELUP00000032492	Laminin, alpha 5.	Laminin, gamma 1.	0.784
ENSELUP00000018320	lamc3	ENSELUP00000018320	ENSELUP00000002360	Laminin, alpha 5.	Laminin, gamma 3.	0.784
LAMA2	ENSELUP00000009981	ENSELUP00000020397	ENSELUP00000009981	Laminin subunit alpha 2.	Laminin, beta 2 (laminin S).	0.736