100 items (Esox lucius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpa3	Uncharacterized protein. (121 aa)
	ENSELUP00000042022	Uncharacterized protein. (236 aa)
	LOC105029799	Uncharacterized protein. (637 aa)
	usp31	Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family. (1310 aa)
	Rev1	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (917 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (531 aa)
	LOC105006276	B30.2/SPRY domain-containing protein. (409 aa)
	LOC105007318	Uncharacterized protein. (550 aa)
	ENSELUP00000038107	Uncharacterized protein. (516 aa)
	LOC105008120	Uncharacterized protein. (565 aa)
	ENSELUP00000037003	Uncharacterized protein. (204 aa)
	ENSELUP00000035321	Uncharacterized protein. (297 aa)
	usp10	Ubiquitin carboxyl-terminal hydrolase. (884 aa)
	ENSELUP00000034827	Uncharacterized protein. (476 aa)
	ENSELUP00000034699	Uncharacterized protein. (469 aa)
	LOC105030740	Uncharacterized protein. (526 aa)
	LOC105026211	Ubiquitin-like domain-containing protein. (128 aa)
	ENSELUP00000034478	Uncharacterized protein. (496 aa)
	ENSELUP00000034442	B30.2/SPRY domain-containing protein. (181 aa)
	ENSELUP00000032700	Uncharacterized protein. (524 aa)
	ENSELUP00000032676	Uncharacterized protein. (217 aa)
	LOC105009910	Uncharacterized protein. (544 aa)
	LOC105027188	Uncharacterized protein. (551 aa)
	LOC106023692	Uncharacterized protein. (552 aa)
	polh	Polymerase (DNA directed), eta. (779 aa)
	LOC105008245	Uncharacterized protein. (549 aa)
	ENSELUP00000030713	RING-type domain-containing protein. (189 aa)
	ENSELUP00000030652	RING-type domain-containing protein. (236 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	ENSELUP00000030130	Replication factor C subunit 1. (1033 aa)
	LOC105008467	Uncharacterized protein. (527 aa)
	ENSELUP00000029560	Uncharacterized protein. (249 aa)
	usp43	Ubiquitin specific peptidase 43a; Belongs to the peptidase C19 family. (1241 aa)
	ENSELUP00000029277	Uncharacterized protein. (500 aa)
	LOC105028498	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (505 aa)
	LOC105006083	Uncharacterized protein. (553 aa)
	ENSELUP00000029061	Uncharacterized protein. (514 aa)
	LOC105007937	Uncharacterized protein. (547 aa)
	LOC105007936	Uncharacterized protein. (521 aa)
	ENSELUP00000028968	B30.2/SPRY domain-containing protein. (195 aa)
	LOC105018650	Uncharacterized protein. (550 aa)
	LOC105019838	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (583 aa)
	Pclaf	PCNA clamp associated factor. (104 aa)
	LOC105006493	Uncharacterized protein. (553 aa)
	ENSELUP00000026363	B30.2/SPRY domain-containing protein. (274 aa)
	LOC105019459	Uncharacterized protein. (552 aa)
	ENSELUP00000025950	RING-type domain-containing protein. (176 aa)
	ENSELUP00000024321	Uncharacterized protein. (337 aa)
	LOC105006037	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (520 aa)
	ENSELUP00000023596	B box-type domain-containing protein. (202 aa)
	LOC105006406	Uncharacterized protein. (365 aa)
	ENSELUP00000022977	Chemokine (C-C motif) ligand 44. (126 aa)
	pole4	Polymerase (DNA-directed), epsilon 4, accessory subunit. (165 aa)
	ENSELUP00000022713	B box-type domain-containing protein. (191 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
	LOC105024444	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	pold4	Si:dkey-28b4.7. (109 aa)
	pole3	Polymerase (DNA directed), epsilon 3 (p17 subunit). (151 aa)
	LOC105020155	Uncharacterized protein. (548 aa)
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (450 aa)
	meiob	Methionine sulfoxide reductase B1b. (471 aa)
	rpa2	Replication protein A2. (299 aa)
	LOC105007038	Bloodthirsty-related gene family, member 1. (682 aa)
	pole2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
	LOC105020646	Uncharacterized protein. (556 aa)
	rfc2	Replication factor C (activator 1) 2. (368 aa)
	LOC105030462	RING-type domain-containing protein. (362 aa)
	ENSELUP00000013265	Uncharacterized protein. (479 aa)
	pold1	DNA polymerase. (1105 aa)
	ENSELUP00000011255	Ig-like domain-containing protein. (211 aa)
	LOC105022042	Uncharacterized protein. (553 aa)
	polk	Polymerase (DNA directed) kappa. (913 aa)
	LOC105013162	Ubiquitin specific peptidase 43b; Belongs to the peptidase C19 family. (1221 aa)
	ENSELUP00000008932	B30.2/SPRY domain-containing protein. (234 aa)
	ENSELUP00000008924	Ig-like domain-containing protein. (176 aa)
	LOC105029479	Uncharacterized protein. (567 aa)
	rfc4	Replication factor C (activator 1) 4. (376 aa)
	LOC105006221	Uncharacterized protein. (570 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
	ENSELUP00000007655	Si:dkey-46i9.6. (248 aa)
	LOC105013139	ATPase family AAA domain containing 5a. (1854 aa)
	ENSELUP00000007608	Bloodthirsty-related gene family, member 12. (605 aa)
	LOC105010822	FinTRIM family, member 82. (564 aa)
	LOC105031011	Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family. (1326 aa)
	ENSELUP00000007119	RING-type domain-containing protein. (231 aa)
	ENSELUP00000005570	Uncharacterized protein. (205 aa)
	ENSELUP00000005542	Uncharacterized protein. (217 aa)
	LOC106023915	Uncharacterized protein. (530 aa)
	LOC105007938	Uncharacterized protein. (590 aa)
	ENSELUP00000004616	Uncharacterized protein. (205 aa)
	LOC106023662	Uncharacterized protein. (551 aa)
	ENSELUP00000004110	Uncharacterized protein. (551 aa)
	ENSELUP00000004059	PRY domain-containing protein. (282 aa)
	kxd1	KxDL motif containing 1. (187 aa)
	rfc5	AAA domain-containing protein. (335 aa)
	ENSELUP00000003468	Ubiquitin-like domain-containing protein. (86 aa)
	rps27a	Ribosomal protein S27a. (177 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (473 aa)
	pole	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (1982 aa)
	ENSELUP00000000650	Uncharacterized protein. (252 aa)

Your Current Organism:

Esox lucius

NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSELUP00000000650	ENSELUP00000003468	ENSELUP00000000650	ENSELUP00000003468	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.411
ENSELUP00000000650	rps27a	ENSELUP00000000650	ENSELUP00000003281	Uncharacterized protein.	Ribosomal protein S27a.	0.423
ENSELUP00000003468	ENSELUP00000000650	ENSELUP00000003468	ENSELUP00000000650	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.411
ENSELUP00000003468	ENSELUP00000004059	ENSELUP00000003468	ENSELUP00000004059	Ubiquitin-like domain-containing protein.	PRY domain-containing protein.	0.411
ENSELUP00000003468	ENSELUP00000004110	ENSELUP00000003468	ENSELUP00000004110	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.411
ENSELUP00000003468	ENSELUP00000004616	ENSELUP00000003468	ENSELUP00000004616	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.411
ENSELUP00000003468	ENSELUP00000005542	ENSELUP00000003468	ENSELUP00000005542	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.411
ENSELUP00000003468	ENSELUP00000005570	ENSELUP00000003468	ENSELUP00000005570	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.411
ENSELUP00000003468	ENSELUP00000007119	ENSELUP00000003468	ENSELUP00000007119	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.411
ENSELUP00000003468	ENSELUP00000007655	ENSELUP00000003468	ENSELUP00000007655	Ubiquitin-like domain-containing protein.	Si:dkey-46i9.6.	0.411
ENSELUP00000003468	ENSELUP00000008924	ENSELUP00000003468	ENSELUP00000008924	Ubiquitin-like domain-containing protein.	Ig-like domain-containing protein.	0.411
ENSELUP00000003468	ENSELUP00000008932	ENSELUP00000003468	ENSELUP00000008932	Ubiquitin-like domain-containing protein.	B30.2/SPRY domain-containing protein.	0.411
ENSELUP00000003468	ENSELUP00000011255	ENSELUP00000003468	ENSELUP00000011255	Ubiquitin-like domain-containing protein.	Ig-like domain-containing protein.	0.411
ENSELUP00000003468	ENSELUP00000013265	ENSELUP00000003468	ENSELUP00000013265	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.411
ENSELUP00000003468	ENSELUP00000022713	ENSELUP00000003468	ENSELUP00000022713	Ubiquitin-like domain-containing protein.	B box-type domain-containing protein.	0.411
ENSELUP00000003468	ENSELUP00000022977	ENSELUP00000003468	ENSELUP00000022977	Ubiquitin-like domain-containing protein.	Chemokine (C-C motif) ligand 44.	0.410
ENSELUP00000003468	ENSELUP00000023596	ENSELUP00000003468	ENSELUP00000023596	Ubiquitin-like domain-containing protein.	B box-type domain-containing protein.	0.411
ENSELUP00000003468	ENSELUP00000024321	ENSELUP00000003468	ENSELUP00000024321	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.411
ENSELUP00000003468	ENSELUP00000025950	ENSELUP00000003468	ENSELUP00000025950	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.411
ENSELUP00000003468	ENSELUP00000026363	ENSELUP00000003468	ENSELUP00000026363	Ubiquitin-like domain-containing protein.	B30.2/SPRY domain-containing protein.	0.411