STRINGSTRING
UPF2 UPF2 rpl28 rpl28 LOC105013976 LOC105013976 RPL35 RPL35 RPL37 RPL37 rps16 rps16 rpl4 rpl4 RPL5 RPL5 pabpc4 pabpc4 rps13 rps13 LOC105016474 LOC105016474 RPS17 RPS17 LOC105007101 LOC105007101 rpl27a rpl27a rps27a rps27a kxd1 kxd1 ENSELUP00000004066 ENSELUP00000004066 LOC105024418 LOC105024418 LOC105025368 LOC105025368 LOC105024420 LOC105024420 ENSELUP00000004824 ENSELUP00000004824 rps12 rps12 rpl23 rpl23 rpl35a rpl35a rpl7 rpl7 rps2 rps2 LOC105028025 LOC105028025 RPL3L RPL3L Rps26 Rps26 rpl31 rpl31 rpl15 rpl15 smg7 smg7 RPSA RPSA rpl34 rpl34 LOC105022019 LOC105022019 rps8 rps8 LOC105025040 LOC105025040 arl6ip1 arl6ip1 rbm8a rbm8a smg5 smg5 LOC105024445 LOC105024445 rps4x rps4x smg8 smg8 rpl13 rpl13 rps9 rps9 LOC105006547 LOC105006547 casc3 casc3 rpl29 rpl29 Rsrc1 Rsrc1 LOC105025806 LOC105025806 ENSELUP00000016782 ENSELUP00000016782 LOC105019289 LOC105019289 pnrc1 pnrc1 LOC105011047 LOC105011047 LOC105024168 LOC105024168 rps25 rps25 rpl23a rpl23a eif4a3 eif4a3 rps6 rps6 LOC105005646 LOC105005646 LOC105026176 LOC105026176 LOC105008943 LOC105008943 ncbp2 ncbp2 rps18 rps18 LOC105024009 LOC105024009 rpl27 rpl27 gspt1 gspt1 rpl12 rpl12 rps11 rps11 rps28 rps28 upf3b upf3b rpl39 rpl39 rpl35 rpl35 rpl10 rpl10 rps19 rps19 smg9 smg9 rps20 rps20 mrnip mrnip LOC105013751 LOC105013751 rnpep rnpep NCBP1 NCBP1 LOC105011263 LOC105011263 rpl7a rpl7a rpl11 rpl11 magoh magoh rps24 rps24 LOC105010844 LOC105010844 rpl17 rpl17 rpl14 rpl14 LOC105008385 LOC105008385 LOC105013954 LOC105013954 LOC105013892 LOC105013892 rps15a rps15a rpl7l1 rpl7l1 rps14 rps14 LOC105008443 LOC105008443 rnpepl1 rnpepl1 LOC105007889 LOC105007889 rpl9 rpl9 rs5 rs5 LOC105027137 LOC105027137 rps13-2 rps13-2 rpl6 rpl6 rpl18a rpl18a ENSELUP00000032295 ENSELUP00000032295 LOC105021206 LOC105021206 LOC105017267 LOC105017267 upf3a upf3a rpl36 rpl36 RPS29 RPS29 rsad1 rsad1 Smg1 Smg1 pih1d3 pih1d3 rpl37a rpl37a UPF1 UPF1 dcp1a dcp1a LOC105029257 LOC105029257 LOC105022559 LOC105022559 rps3a rps3a rpl21 rpl21 rpl18 rpl18 LOC105014690 LOC105014690 rpl13a rpl13a rnps1 rnps1 rpl30 rpl30 LOC105011486 LOC105011486 RPL19 RPL19 rps21 rps21 LOC105017455 LOC105017455 rps15 rps15 rps10 rps10 LOC105024419 LOC105024419 rpl24 rpl24 LOC105011475 LOC105011475 RPLP2 RPLP2 rplp1 rplp1 LOC105008159 LOC105008159 LOC105013069 LOC105013069 rpl8 rpl8 rplp0 rplp0 LOC105006097 LOC105006097
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1278 aa)
rpl28Ribosomal protein L28. (137 aa)
LOC10501397660S ribosomal protein L32. (135 aa)
RPL35Ribosomal protein L35. (138 aa)
RPL37Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
rps1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
rpl4Ribosomal protein L4. (382 aa)
RPL5Ribosomal protein L5. (301 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (639 aa)
rps13Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
LOC105016474Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (632 aa)
RPS17Ribosomal protein S17. (134 aa)
LOC10500710140S ribosomal protein S27. (184 aa)
rpl27aRibosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (148 aa)
rps27aRibosomal protein S27a. (177 aa)
kxd1KxDL motif containing 1. (187 aa)
ENSELUP00000004066Uncharacterized protein. (344 aa)
LOC10502441860S ribosomal protein L26. (145 aa)
LOC105025368Uncharacterized protein. (240 aa)
LOC105024420Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (443 aa)
ENSELUP00000004824SMG6 nonsense mediated mRNA decay factor. (1816 aa)
rps1240S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
rpl23Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (140 aa)
rpl35aRibosomal protein L35a. (131 aa)
rpl760S ribosomal protein L7. (245 aa)
rps2Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (263 aa)
LOC10502802540S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (205 aa)
RPL3LRibosomal protein L3 like; Belongs to the universal ribosomal protein uL3 family. (412 aa)
Rps2640S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (123 aa)
rpl31Ribosomal protein L31. (125 aa)
rpl15Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1187 aa)
RPSA40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (322 aa)
rpl34Ribosomal protein L34. (117 aa)
LOC105022019Ribosomal protein L22-like 1. (175 aa)
rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
LOC105025040Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (143 aa)
arl6ip1ADP-ribosylation factor-like 6 interacting protein 1. (203 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1114 aa)
LOC10502444540S ribosomal protein S27. (107 aa)
rps4x40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (264 aa)
smg8SMG8 nonsense mediated mRNA decay factor. (934 aa)
rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
rps940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
LOC105006547Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (636 aa)
casc3Casc3 exon junction complex subunit. (772 aa)
rpl2960S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (93 aa)
Rsrc1Arginine/serine-rich coiled-coil 1. (202 aa)
LOC105025806Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (128 aa)
ENSELUP00000016782Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
LOC105019289Proline-rich nuclear receptor coactivator 2. (156 aa)
pnrc1Proline-rich nuclear receptor coactivator 1. (276 aa)
LOC105011047KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (245 aa)
LOC105024168Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (448 aa)
rps2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (143 aa)
rpl23aRibosomal protein L23a. (196 aa)
eif4a3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (406 aa)
rps640S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (252 aa)
LOC105005646Ribosomal protein L32. (135 aa)
LOC105026176eRF1_1 domain-containing protein. (443 aa)
LOC105008943Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (479 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (155 aa)
rps18Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (153 aa)
LOC105024009Ribosomal protein L5. (298 aa)
rpl2760S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
gspt1G1 to S phase transition 1. (602 aa)
rpl12Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
rps11Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (158 aa)
rps28Ribosomal protein S28. (75 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (484 aa)
rpl39Ribosomal protein L39. (102 aa)
rpl35Uncharacterized protein. (153 aa)
rpl10Ribosomal_L16 domain-containing protein. (215 aa)
rps19Ribosomal protein S19. (152 aa)
smg9SMG9 nonsense mediated mRNA decay factor. (507 aa)
rps20Ribosomal_S10 domain-containing protein. (119 aa)
mrnipUncharacterized protein. (385 aa)
LOC105013751Uncharacterized protein. (134 aa)
rnpepArginyl aminopeptidase (aminopeptidase B). (624 aa)
NCBP1Nuclear cap binding protein subunit 1. (796 aa)
LOC105011263Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
rpl7aRibosomal protein L7a. (266 aa)
rpl11Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (177 aa)
magohMago nashi homolog. (147 aa)
rps2440S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
LOC105010844Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (246 aa)
rpl17Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (186 aa)
rpl14Ribosomal protein L14. (154 aa)
LOC105008385Poly(A) binding protein, cytoplasmic 1-like. (659 aa)
LOC10501395440S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
LOC105013892Ribosomal protein L22. (131 aa)
rps15aUncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpl7l1Ribosomal protein L7-like 1. (249 aa)
rps14Uncharacterized protein. (161 aa)
LOC105008443Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (209 aa)
rnpepl1Arginyl aminopeptidase like 1. (700 aa)
LOC105007889RRM domain-containing protein. (291 aa)
rpl960S ribosomal protein L9. (192 aa)
rs5Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (205 aa)
LOC10502713740S ribosomal protein S27. (84 aa)
rps13-240S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
rpl6Ribosomal protein L6. (259 aa)
rpl18a60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
ENSELUP0000003229540S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (225 aa)
LOC105021206Uncharacterized protein. (1133 aa)
LOC105017267Ribosomal protein L22. (163 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (460 aa)
rpl3660S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (156 aa)
RPS29Ribosomal protein S29. (82 aa)
rsad1Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (476 aa)
Smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3709 aa)
pih1d3PIH1 domain containing 3. (191 aa)
rpl37aRibosomal protein L37a. (68 aa)
UPF1UPF1 RNA helicase and ATPase. (1107 aa)
dcp1aDecapping mRNA 1A. (516 aa)
LOC105029257Eukaryotic translation termination factor 1a. (446 aa)
LOC105022559Uncharacterized protein. (206 aa)
rps3a40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (344 aa)
rpl21Ribosomal protein L21. (160 aa)
rpl18Ribosomal protein L18. (188 aa)
LOC105014690NAD(P)-bd_dom domain-containing protein. (221 aa)
rpl13aRibosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (205 aa)
rnps1RNA binding protein S1, serine-rich domain. (271 aa)
rpl30Ribosomal protein L30. (132 aa)
LOC105011486Protein phosphatase 2, regulatory subunit A, beta b. (595 aa)
RPL19Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)
rps21Ribosomal protein S21. (183 aa)
LOC105017455Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (152 aa)
rps15Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
rps10S10_plectin domain-containing protein. (172 aa)
LOC105024419UPF1 RNA helicase and ATPase. (1103 aa)
rpl24Ribosomal protein L24. (151 aa)
LOC10501147540S ribosomal protein S27. (84 aa)
RPLP260S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
rplp1Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)
LOC105008159Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (146 aa)
LOC105013069G1 to S phase transition 1, like. (578 aa)
rpl8Ribosomal protein L8. (286 aa)
rplp060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
LOC105006097Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
Your Current Organism:
Esox lucius
NCBI taxonomy Id: 8010
Other names: E. lucius, northern pike
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