5 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060W3Z5	Uncharacterized protein. (361 aa)
	A0A060WAU9	Uncharacterized protein. (75 aa)
	A0A060XPL2	Uncharacterized protein. (56 aa)
	A0A060YFG8	Uncharacterized protein. (107 aa)
	A0A060Z9D0	Uncharacterized protein. (444 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060W3Z5	A0A060WAU9	Uncharacterized protein.	Uncharacterized protein.	0.974
A0A060W3Z5	A0A060XPL2	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A060W3Z5	A0A060YFG8	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A060W3Z5	A0A060Z9D0	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A060WAU9	A0A060W3Z5	Uncharacterized protein.	Uncharacterized protein.	0.974
A0A060WAU9	A0A060XPL2	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A060WAU9	A0A060YFG8	Uncharacterized protein.	Uncharacterized protein.	0.972
A0A060WAU9	A0A060Z9D0	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A060XPL2	A0A060W3Z5	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A060XPL2	A0A060WAU9	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A060XPL2	A0A060YFG8	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060XPL2	A0A060Z9D0	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A060YFG8	A0A060W3Z5	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A060YFG8	A0A060WAU9	Uncharacterized protein.	Uncharacterized protein.	0.972
A0A060YFG8	A0A060XPL2	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060YFG8	A0A060Z9D0	Uncharacterized protein.	Uncharacterized protein.	0.963
A0A060Z9D0	A0A060W3Z5	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A060Z9D0	A0A060WAU9	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A060Z9D0	A0A060XPL2	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A060Z9D0	A0A060YFG8	Uncharacterized protein.	Uncharacterized protein.	0.963