(5 nodes) CAF1 family ribonuclease, and Ribosome biogenesis protein SLX9 network (Oncorhynchus mykiss)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060W586	C3H1-type domain-containing protein. (489 aa)
	A0A060X8D8	Uncharacterized protein. (251 aa)
	A0A060YT97	RNA_bind domain-containing protein. (285 aa)
	A0A060Z3U0	Uncharacterized protein. (138 aa)
	A0A061AG08	Uncharacterized protein. (102 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060W586	A0A060X8D8	C3H1-type domain-containing protein.	Uncharacterized protein.	0.436
A0A060W586	A0A060YT97	C3H1-type domain-containing protein.	RNA_bind domain-containing protein.	0.501
A0A060W586	A0A060Z3U0	C3H1-type domain-containing protein.	Uncharacterized protein.	0.546
A0A060W586	A0A061AG08	C3H1-type domain-containing protein.	Uncharacterized protein.	0.501
A0A060X8D8	A0A060W586	Uncharacterized protein.	C3H1-type domain-containing protein.	0.436
A0A060X8D8	A0A060YT97	Uncharacterized protein.	RNA_bind domain-containing protein.	0.637
A0A060X8D8	A0A061AG08	Uncharacterized protein.	Uncharacterized protein.	0.637
A0A060YT97	A0A060W586	RNA_bind domain-containing protein.	C3H1-type domain-containing protein.	0.501
A0A060YT97	A0A060X8D8	RNA_bind domain-containing protein.	Uncharacterized protein.	0.637
A0A060YT97	A0A060Z3U0	RNA_bind domain-containing protein.	Uncharacterized protein.	0.730
A0A060Z3U0	A0A060W586	Uncharacterized protein.	C3H1-type domain-containing protein.	0.546
A0A060Z3U0	A0A060YT97	Uncharacterized protein.	RNA_bind domain-containing protein.	0.730
A0A060Z3U0	A0A061AG08	Uncharacterized protein.	Uncharacterized protein.	0.730
A0A061AG08	A0A060W586	Uncharacterized protein.	C3H1-type domain-containing protein.	0.501
A0A061AG08	A0A060X8D8	Uncharacterized protein.	Uncharacterized protein.	0.637
A0A061AG08	A0A060Z3U0	Uncharacterized protein.	Uncharacterized protein.	0.730