STRINGSTRING
A0A060VSY0 A0A060VSY0 A0A060VSZ8 A0A060VSZ8 A0A060VUK6 A0A060VUK6 LSM1 LSM1 LSM4 LSM4 A0A060W9A4 A0A060W9A4 LSM5 LSM5 A0A060WSI6 A0A060WSI6 A0A060WY37 A0A060WY37 A0A060X4M1 A0A060X4M1 A0A060X824 A0A060X824 A0A060XE54 A0A060XE54 A0A060XJG6 A0A060XJG6 LSM1-2 LSM1-2 LSM1-3 LSM1-3 LSM3 LSM3 A0A060YR15 A0A060YR15 A0A060YY38 A0A060YY38 A0A060Z1D0 A0A060Z1D0 LSM4-2 LSM4-2 LSM5-2 LSM5-2 A0A060ZQP2 A0A060ZQP2 LSM7 LSM7 LSM7-2 LSM7-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A060VSY0Uncharacterized protein. (99 aa)
A0A060VSZ8WD_REPEATS_REGION domain-containing protein. (1408 aa)
A0A060VUK6Uncharacterized protein; Belongs to the DEAD box helicase family. (456 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (110 aa)
A0A060W9A4Uncharacterized protein; Belongs to the DEAD box helicase family. (378 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
A0A060WSI6DCP2 domain-containing protein. (72 aa)
A0A060WY37Uncharacterized protein. (460 aa)
A0A060X4M1Uncharacterized protein. (173 aa)
A0A060X824PAT1 domain-containing protein. (671 aa)
A0A060XE54Uncharacterized protein. (321 aa)
A0A060XJG6YjeF N-terminal domain-containing protein. (195 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (139 aa)
LSM1-3U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
A0A060YR15Sm domain-containing protein. (68 aa)
A0A060YY38Sm domain-containing protein. (94 aa)
A0A060Z1D0Sm domain-containing protein. (68 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM5-2U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (57 aa)
A0A060ZQP2Helicase C-terminal domain-containing protein. (132 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (107 aa)
LSM7-2U6 snRNA-associated Sm-like protein LSm7. (111 aa)
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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