(5 nodes) Deadenylation-independent decapping of nuclear-transcribed mRNA, and mRNA decay factor PAT1 domain network (Oncorhynchus mykiss)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060VSY0	Uncharacterized protein. (99 aa)
	A0A060VSZ8	WD_REPEATS_REGION domain-containing protein. (1408 aa)
	A0A060WSI6	DCP2 domain-containing protein. (72 aa)
	A0A060X824	PAT1 domain-containing protein. (671 aa)
	A0A060XJG6	YjeF N-terminal domain-containing protein. (195 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VSY0	A0A060VSZ8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.986
A0A060VSY0	A0A060WSI6	Uncharacterized protein.	DCP2 domain-containing protein.	0.988
A0A060VSY0	A0A060X824	Uncharacterized protein.	PAT1 domain-containing protein.	0.938
A0A060VSY0	A0A060XJG6	Uncharacterized protein.	YjeF N-terminal domain-containing protein.	0.959
A0A060VSZ8	A0A060VSY0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.986
A0A060VSZ8	A0A060WSI6	WD_REPEATS_REGION domain-containing protein.	DCP2 domain-containing protein.	0.990
A0A060VSZ8	A0A060X824	WD_REPEATS_REGION domain-containing protein.	PAT1 domain-containing protein.	0.964
A0A060VSZ8	A0A060XJG6	WD_REPEATS_REGION domain-containing protein.	YjeF N-terminal domain-containing protein.	0.964
A0A060WSI6	A0A060VSY0	DCP2 domain-containing protein.	Uncharacterized protein.	0.988
A0A060WSI6	A0A060VSZ8	DCP2 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.990
A0A060WSI6	A0A060X824	DCP2 domain-containing protein.	PAT1 domain-containing protein.	0.986
A0A060WSI6	A0A060XJG6	DCP2 domain-containing protein.	YjeF N-terminal domain-containing protein.	0.983
A0A060X824	A0A060VSY0	PAT1 domain-containing protein.	Uncharacterized protein.	0.938
A0A060X824	A0A060VSZ8	PAT1 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.964
A0A060X824	A0A060WSI6	PAT1 domain-containing protein.	DCP2 domain-containing protein.	0.986
A0A060X824	A0A060XJG6	PAT1 domain-containing protein.	YjeF N-terminal domain-containing protein.	0.941
A0A060XJG6	A0A060VSY0	YjeF N-terminal domain-containing protein.	Uncharacterized protein.	0.959
A0A060XJG6	A0A060VSZ8	YjeF N-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.964
A0A060XJG6	A0A060WSI6	YjeF N-terminal domain-containing protein.	DCP2 domain-containing protein.	0.983
A0A060XJG6	A0A060X824	YjeF N-terminal domain-containing protein.	PAT1 domain-containing protein.	0.941