(16 nodes) Nuclear exosome (RNase complex), and rRNA-processing arch domain network (Oncorhynchus mykiss)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060VUY9	S1 motif domain-containing protein. (295 aa)
	A0A060VXW7	Uncharacterized protein. (291 aa)
	A0A060W270	Uncharacterized protein. (245 aa)
	A0A060W2J9	KH_dom_type_1 domain-containing protein. (241 aa)
	A0A060W4S0	HRDC domain-containing protein. (885 aa)
	A0A060W7P4	Uncharacterized protein. (295 aa)
	A0A060WBC1	Uncharacterized protein. (1065 aa)
	A0A060WDG7	Uncharacterized protein. (160 aa)
	A0A060WI39	Uncharacterized protein. (1132 aa)
	A0A060X272	RNase_PH domain-containing protein. (277 aa)
	A0A060YB16	Uncharacterized protein. (164 aa)
	A0A060YK55	RNase_PH domain-containing protein. (581 aa)
	A0A060YZR4	PINc domain-containing protein. (305 aa)
	A0A060ZGE7	Uncharacterized protein. (204 aa)
	A0A060ZH78	RNase_PH domain-containing protein. (179 aa)
	A0A061ADY1	RNase_PH domain-containing protein. (164 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VUY9	A0A060VXW7	S1 motif domain-containing protein.	Uncharacterized protein.	0.998
A0A060VUY9	A0A060W270	S1 motif domain-containing protein.	Uncharacterized protein.	0.998
A0A060VUY9	A0A060W2J9	S1 motif domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.998
A0A060VUY9	A0A060W4S0	S1 motif domain-containing protein.	HRDC domain-containing protein.	0.996
A0A060VUY9	A0A060W7P4	S1 motif domain-containing protein.	Uncharacterized protein.	0.543
A0A060VUY9	A0A060WBC1	S1 motif domain-containing protein.	Uncharacterized protein.	0.993
A0A060VUY9	A0A060WDG7	S1 motif domain-containing protein.	Uncharacterized protein.	0.993
A0A060VUY9	A0A060WI39	S1 motif domain-containing protein.	Uncharacterized protein.	0.968
A0A060VUY9	A0A060X272	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.996
A0A060VUY9	A0A060YB16	S1 motif domain-containing protein.	Uncharacterized protein.	0.998
A0A060VUY9	A0A060YK55	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.996
A0A060VUY9	A0A060YZR4	S1 motif domain-containing protein.	PINc domain-containing protein.	0.991
A0A060VUY9	A0A060ZGE7	S1 motif domain-containing protein.	Uncharacterized protein.	0.991
A0A060VUY9	A0A060ZH78	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.996
A0A060VUY9	A0A061ADY1	S1 motif domain-containing protein.	RNase_PH domain-containing protein.	0.996
A0A060VXW7	A0A060VUY9	Uncharacterized protein.	S1 motif domain-containing protein.	0.998
A0A060VXW7	A0A060W270	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A060VXW7	A0A060W2J9	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
A0A060VXW7	A0A060W4S0	Uncharacterized protein.	HRDC domain-containing protein.	0.999
A0A060VXW7	A0A060W7P4	Uncharacterized protein.	Uncharacterized protein.	0.998