19 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060VTG3	Uncharacterized protein; Belongs to the AAA ATPase family. (438 aa)
	A0A060VTT0	Uncharacterized protein. (508 aa)
	A0A060W113	Uncharacterized protein. (220 aa)
	A0A060W2L3	Uncharacterized protein. (199 aa)
	A0A060W3H5	Uncharacterized protein. (220 aa)
	A0A060W6E2	Uncharacterized protein. (199 aa)
	A0A060W7U9	Uncharacterized protein; Belongs to the AAA ATPase family. (436 aa)
	A0A060WBH2	Uncharacterized protein. (220 aa)
	A0A060WDS2	Uncharacterized protein. (322 aa)
	A0A060WHB7	Uncharacterized protein. (207 aa)
	A0A060WQH5	Uncharacterized protein; Belongs to the AAA ATPase family. (527 aa)
	A0A060WQW2	Uncharacterized protein. (260 aa)
	A0A060XLU7	Uncharacterized protein. (288 aa)
	A0A060YWK4	Uncharacterized protein. (220 aa)
	A0A060YZF8	Uncharacterized protein. (290 aa)
	A0A060Z0Y6	Uncharacterized protein. (121 aa)
	A0A060Z1M0	Uncharacterized protein. (157 aa)
	A0A060Z4Q4	Uncharacterized protein; Belongs to the AAA ATPase family. (184 aa)
	A0A061AF14	Uncharacterized protein. (96 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VTG3	A0A060VTT0	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.844
A0A060VTG3	A0A060W113	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.921
A0A060VTG3	A0A060W2L3	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.968
A0A060VTG3	A0A060W3H5	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.979
A0A060VTG3	A0A060W6E2	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.968
A0A060VTG3	A0A060W7U9	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.785
A0A060VTG3	A0A060WBH2	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.968
A0A060VTG3	A0A060WDS2	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.969
A0A060VTG3	A0A060WHB7	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.969
A0A060VTG3	A0A060WQW2	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.954
A0A060VTG3	A0A060XLU7	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.964
A0A060VTG3	A0A060YWK4	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.936
A0A060VTG3	A0A060YZF8	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.844
A0A060VTG3	A0A060Z0Y6	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.942
A0A060VTG3	A0A060Z1M0	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.936
A0A060VTG3	A0A060Z4Q4	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.786
A0A060VTG3	A0A061AF14	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.921
A0A060VTT0	A0A060VTG3	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.844
A0A060VTT0	A0A060W113	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A060VTT0	A0A060W2L3	Uncharacterized protein.	Uncharacterized protein.	0.908