STRINGSTRING
A0A060XGC8 A0A060XGC8 A0A060VSC5 A0A060VSC5 A0A060VV71 A0A060VV71 A0A060VVA6 A0A060VVA6 A0A060VYV3 A0A060VYV3 A0A060VZ26 A0A060VZ26 A0A060W1D1 A0A060W1D1 A0A060W6L1 A0A060W6L1 LSM4 LSM4 A0A060W7D2 A0A060W7D2 A0A060WB98 A0A060WB98 A0A060WBE6 A0A060WBE6 A0A060WC50 A0A060WC50 A0A060WDE4 A0A060WDE4 A0A060WII1 A0A060WII1 SNRPC SNRPC A0A060WL12 A0A060WL12 A0A060WMR8 A0A060WMR8 SNRPC-2 SNRPC-2 A0A060WSE2 A0A060WSE2 A0A060WUC1 A0A060WUC1 SNRPC-3 SNRPC-3 A0A060WZZ2 A0A060WZZ2 A0A060X0A1 A0A060X0A1 A0A060X4G3 A0A060X4G3 A0A060X5J9 A0A060X5J9 A0A060X674 A0A060X674 A0A060XCZ5 A0A060XCZ5 A0A060XGB8 A0A060XGB8 A0A060XHA7 A0A060XHA7 A0A060XL73 A0A060XL73 A0A060XLH2 A0A060XLH2 A0A060XTB2 A0A060XTB2 A0A060XU52 A0A060XU52 A0A060XUX2 A0A060XUX2 A0A060XV53 A0A060XV53 A0A060XZM9 A0A060XZM9 A0A060XZY4 A0A060XZY4 A0A060Y210 A0A060Y210 A0A060Y369 A0A060Y369 A0A060Y410 A0A060Y410 A0A060Y502 A0A060Y502 A0A060Y7J4 A0A060Y7J4 A0A060Y7S1 A0A060Y7S1 A0A060Y8T8 A0A060Y8T8 A0A060YA01 A0A060YA01 A0A060YB35 A0A060YB35 A0A060YBC8 A0A060YBC8 A0A060YD91 A0A060YD91 A0A060YG79 A0A060YG79 A0A060YJA3 A0A060YJA3 A0A060YLT0 A0A060YLT0 A0A060YT29 A0A060YT29 A0A060YY38 A0A060YY38 LSM4-2 LSM4-2 A0A060Z4V8 A0A060Z4V8 A0A060Z699 A0A060Z699 A0A060ZBC5 A0A060ZBC5 A0A060ZF79 A0A060ZF79 SMD3 SMD3 SMD2 SMD2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A060XGC8Small nuclear ribonucleoprotein Sm D2. (165 aa)
A0A060VSC5Uncharacterized protein. (483 aa)
A0A060VV71Uncharacterized protein. (1089 aa)
A0A060VVA6Uncharacterized protein. (128 aa)
A0A060VYV3Tudor domain-containing protein. (178 aa)
A0A060VZ26Uncharacterized protein. (171 aa)
A0A060W1D1Uncharacterized protein. (238 aa)
A0A060W6L1SMN domain-containing protein. (204 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (110 aa)
A0A060W7D2WD_REPEATS_REGION domain-containing protein. (1483 aa)
A0A060WB98WD_REPEATS_REGION domain-containing protein. (331 aa)
A0A060WBE6Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (266 aa)
A0A060WC50Uncharacterized protein. (951 aa)
A0A060WDE4Uncharacterized protein. (232 aa)
A0A060WII1Small nuclear ribonucleoprotein Sm D3. (127 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (157 aa)
A0A060WL12Small nuclear ribonucleoprotein Sm D3. (183 aa)
A0A060WMR8Uncharacterized protein. (647 aa)
SNRPC-2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (156 aa)
A0A060WSE2Uncharacterized protein. (504 aa)
A0A060WUC1SPATA6 domain-containing protein. (378 aa)
SNRPC-3U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (157 aa)
A0A060WZZ2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (264 aa)
A0A060X0A1Tudor domain-containing protein. (281 aa)
A0A060X4G3Small nuclear ribonucleoprotein-associated protein. (229 aa)
A0A060X5J9Uncharacterized protein. (505 aa)
A0A060X674Tudor domain-containing protein. (278 aa)
A0A060XCZ5Uncharacterized protein. (1088 aa)
A0A060XGB8Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
A0A060XHA7MPN domain-containing protein. (2359 aa)
A0A060XL73Uncharacterized protein. (223 aa)
A0A060XLH2Uncharacterized protein. (128 aa)
A0A060XTB2Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (631 aa)
A0A060XU52Protein arginine N-methyltransferase; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being r [...] (684 aa)
A0A060XUX2Uncharacterized protein. (243 aa)
A0A060XV53Tudor domain-containing protein. (289 aa)
A0A060XZM9Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
A0A060XZY4MPN domain-containing protein. (2338 aa)
A0A060Y210Uncharacterized protein. (220 aa)
A0A060Y369PWI domain-containing protein. (230 aa)
A0A060Y410Uncharacterized protein. (756 aa)
A0A060Y502Small nuclear ribonucleoprotein G. (76 aa)
A0A060Y7J4Sm domain-containing protein. (61 aa)
A0A060Y7S1PWI domain-containing protein. (380 aa)
A0A060Y8T8Uncharacterized protein. (45 aa)
A0A060YA01Prp31_C domain-containing protein. (228 aa)
A0A060YB35Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (631 aa)
A0A060YBC8Uncharacterized protein. (234 aa)
A0A060YD91Uncharacterized protein. (372 aa)
A0A060YG79Uncharacterized protein; Belongs to the DEAD box helicase family. (758 aa)
A0A060YJA3Sm domain-containing protein. (105 aa)
A0A060YLT0Sm domain-containing protein. (138 aa)
A0A060YT29Sm domain-containing protein. (121 aa)
A0A060YY38Sm domain-containing protein. (94 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
A0A060Z4V8Uncharacterized protein. (160 aa)
A0A060Z699WD_REPEATS_REGION domain-containing protein. (170 aa)
A0A060ZBC5PRP1_N domain-containing protein. (229 aa)
A0A060ZF79Uncharacterized protein. (85 aa)
SMD3Small nuclear ribonucleoprotein Sm D3. (128 aa)
SMD2Small nuclear ribonucleoprotein Sm D2. (111 aa)
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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