42 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060Y5D0	Uncharacterized protein. (110 aa)
	W5S1H5_ONCMY	Pre-mRNA branch site protein p14-1. (125 aa)
	LSM7-2	U6 snRNA-associated Sm-like protein LSm7. (111 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (107 aa)
	SMD3	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	SF3B5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	A0A060YZA8	Ubiquitin-like domain-containing protein. (189 aa)
	A0A060YXG9	Uncharacterized protein. (174 aa)
	A0A060YTT6	Uncharacterized protein. (130 aa)
	A0A060YT29	Sm domain-containing protein. (121 aa)
	A0A060YLT0	Sm domain-containing protein. (138 aa)
	A0A060YL86	Uncharacterized protein. (222 aa)
	A0A060YJD4	Uncharacterized protein. (114 aa)
	A0A060YJA3	Sm domain-containing protein. (105 aa)
	A0A060YC23	Uncharacterized protein. (368 aa)
	A0A060Y7J4	Sm domain-containing protein. (61 aa)
	A0A060Y5V1	RRM domain-containing protein. (477 aa)
	A0A060Y502	Small nuclear ribonucleoprotein G. (76 aa)
	A0A060XZM9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	A0A060XY06	CHHC U11-48K-type domain-containing protein. (354 aa)
	A0A060XWQ5	SF3b1 domain-containing protein. (1326 aa)
	A0A060XUP6	Uncharacterized protein. (402 aa)
	A0A060XTK4	SF3b1 domain-containing protein. (1328 aa)
	A0A060XQB2	RRM domain-containing protein. (278 aa)
	A0A060XNY6	RRM domain-containing protein. (383 aa)
	A0A060XJT6	SAP domain-containing protein. (903 aa)
	A0A060XHZ0	Uncharacterized protein. (266 aa)
	A0A060XDF9	RRM domain-containing protein. (543 aa)
	A0A060X132	C3H1-type domain-containing protein. (176 aa)
	A0A060X0V5	Uncharacterized protein. (759 aa)
	A0A060X0B3	RRM domain-containing protein. (355 aa)
	A0A060WZ72	Uncharacterized protein. (437 aa)
	A0A060WYK2	RRM domain-containing protein. (168 aa)
	A0A060WY94	RRM domain-containing protein. (376 aa)
	A0A060WY32	Ubiquitin-like domain-containing protein. (187 aa)
	A0A060WV29	SAP domain-containing protein. (897 aa)
	A0A060WU35	Uncharacterized protein. (515 aa)
	A0A060WRP4	OB_NTP_bind domain-containing protein. (181 aa)
	A0A060WL12	Small nuclear ribonucleoprotein Sm D3. (183 aa)
	A0A060WJX6	Uncharacterized protein. (550 aa)
	A0A060WII1	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	A0A060WAM5	Uncharacterized protein. (761 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060WAM5	A0A060WII1	A0A060WAM5	A0A060WII1	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.945
A0A060WAM5	A0A060WL12	A0A060WAM5	A0A060WL12	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.945
A0A060WAM5	A0A060WU35	A0A060WAM5	A0A060WU35	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A060WAM5	A0A060WV29	A0A060WAM5	A0A060WV29	Uncharacterized protein.	SAP domain-containing protein.	0.896
A0A060WAM5	A0A060WY94	A0A060WAM5	A0A060WY94	Uncharacterized protein.	RRM domain-containing protein.	0.481
A0A060WAM5	A0A060WYK2	A0A060WAM5	A0A060WYK2	Uncharacterized protein.	RRM domain-containing protein.	0.523
A0A060WAM5	A0A060WZ72	A0A060WAM5	A0A060WZ72	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A060WAM5	A0A060X0B3	A0A060WAM5	A0A060X0B3	Uncharacterized protein.	RRM domain-containing protein.	0.881
A0A060WAM5	A0A060XDF9	A0A060WAM5	A0A060XDF9	Uncharacterized protein.	RRM domain-containing protein.	0.523
A0A060WAM5	A0A060XHZ0	A0A060WAM5	A0A060XHZ0	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A060WAM5	A0A060XJT6	A0A060WAM5	A0A060XJT6	Uncharacterized protein.	SAP domain-containing protein.	0.896
A0A060WAM5	A0A060XNY6	A0A060WAM5	A0A060XNY6	Uncharacterized protein.	RRM domain-containing protein.	0.481
A0A060WAM5	A0A060XQB2	A0A060WAM5	A0A060XQB2	Uncharacterized protein.	RRM domain-containing protein.	0.523
A0A060WAM5	A0A060XTK4	A0A060WAM5	A0A060XTK4	Uncharacterized protein.	SF3b1 domain-containing protein.	0.944
A0A060WAM5	A0A060XUP6	A0A060WAM5	A0A060XUP6	Uncharacterized protein.	Uncharacterized protein.	0.881
A0A060WAM5	A0A060XWQ5	A0A060WAM5	A0A060XWQ5	Uncharacterized protein.	SF3b1 domain-containing protein.	0.944
A0A060WAM5	A0A060XY06	A0A060WAM5	A0A060XY06	Uncharacterized protein.	CHHC U11-48K-type domain-containing protein.	0.682
A0A060WAM5	A0A060XZM9	A0A060WAM5	A0A060XZM9	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.983
A0A060WAM5	A0A060Y502	A0A060WAM5	A0A060Y502	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.983
A0A060WAM5	A0A060Y5D0	A0A060WAM5	A0A060Y5D0	Uncharacterized protein.	Uncharacterized protein.	0.943