20 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060Y9V9	ABC transporter domain-containing protein. (301 aa)
	A0A060W020	Uncharacterized protein. (1089 aa)
	A0A060WH49	Uncharacterized protein. (1489 aa)
	A0A060WN31	ABC transporter domain-containing protein. (130 aa)
	A0A060WUP0	Uncharacterized protein. (1907 aa)
	A0A060XGU4	Uncharacterized protein. (1523 aa)
	A0A060XKS4	Uncharacterized protein. (1436 aa)
	A0A060XMX7	Uncharacterized protein. (151 aa)
	A0A060XUK4	Uncharacterized protein. (438 aa)
	A0A060XV63	ABC transporter domain-containing protein. (354 aa)
	A0A060YER1	Uncharacterized protein. (366 aa)
	A0A060YM89	ABC transporter domain-containing protein. (572 aa)
	A0A060YRM7	Uncharacterized protein. (186 aa)
	A0A060Z2S4	ABC transmembrane type-1 domain-containing protein. (272 aa)
	A0A060Z4F4	Rho-GAP domain-containing protein. (242 aa)
	A0A060Z5U8	Uncharacterized protein. (163 aa)
	A0A060Z7M1	Uncharacterized protein. (108 aa)
	A0A060Z828	Uncharacterized protein. (216 aa)
	A0A060ZA92	Uncharacterized protein. (125 aa)
	A0A060ZIJ4	Uncharacterized protein. (124 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060W020	A0A060YM89	Uncharacterized protein.	ABC transporter domain-containing protein.	0.837
A0A060W020	A0A060Z5U8	Uncharacterized protein.	Uncharacterized protein.	0.837
A0A060W020	A0A060ZA92	Uncharacterized protein.	Uncharacterized protein.	0.837
A0A060W020	A0A060ZIJ4	Uncharacterized protein.	Uncharacterized protein.	0.837
A0A060WH49	A0A060YM89	Uncharacterized protein.	ABC transporter domain-containing protein.	0.543
A0A060WH49	A0A060Z5U8	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A060WH49	A0A060ZA92	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A060WH49	A0A060ZIJ4	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A060WN31	A0A060YM89	ABC transporter domain-containing protein.	ABC transporter domain-containing protein.	0.543
A0A060WN31	A0A060Z5U8	ABC transporter domain-containing protein.	Uncharacterized protein.	0.543
A0A060WN31	A0A060ZA92	ABC transporter domain-containing protein.	Uncharacterized protein.	0.543
A0A060WN31	A0A060ZIJ4	ABC transporter domain-containing protein.	Uncharacterized protein.	0.543
A0A060WUP0	A0A060YM89	Uncharacterized protein.	ABC transporter domain-containing protein.	0.543
A0A060WUP0	A0A060Z5U8	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A060WUP0	A0A060ZA92	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A060WUP0	A0A060ZIJ4	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A060XGU4	A0A060YM89	Uncharacterized protein.	ABC transporter domain-containing protein.	0.605
A0A060XGU4	A0A060Z5U8	Uncharacterized protein.	Uncharacterized protein.	0.605
A0A060XGU4	A0A060ZA92	Uncharacterized protein.	Uncharacterized protein.	0.605
A0A060XGU4	A0A060ZIJ4	Uncharacterized protein.	Uncharacterized protein.	0.605