35 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060XQ48	SH3 domain-containing protein. (379 aa)
	A0A060XSG7	DUF4745 domain-containing protein. (1082 aa)
	A0A060XVU2	Ras-GAP domain-containing protein. (260 aa)
	A0A060XWC7	Uncharacterized protein. (191 aa)
	A0A060XX99	Uncharacterized protein. (438 aa)
	A0A060Y1F2	CRAL-TRIO domain-containing protein. (1205 aa)
	A0A060Y2M4	Uncharacterized protein. (624 aa)
	A0A060Y5S7	DUF4745 domain-containing protein. (1048 aa)
	A0A060YCT2	Uncharacterized protein. (150 aa)
	A0A060YFG8	Uncharacterized protein. (107 aa)
	A0A060YNM9	Uncharacterized protein. (96 aa)
	A0A060YWC3	Uncharacterized protein. (150 aa)
	A0A060YV03	Ras-GAP domain-containing protein. (433 aa)
	A0A060YRM3	Uncharacterized protein. (773 aa)
	A0A060WXY2	Uncharacterized protein. (191 aa)
	A0A060WXJ3	Uncharacterized protein. (174 aa)
	A0A060YQ79	PX domain-containing protein. (223 aa)
	A0A060WTK4	Uncharacterized protein. (572 aa)
	A0A060WKP7	Uncharacterized protein. (2421 aa)
	A0A060YQ66	Uncharacterized protein. (231 aa)
	A0A060ZWH1	Uncharacterized protein. (83 aa)
	A0A061ADQ8	Uncharacterized protein. (154 aa)
	A0A060ZC89	Uncharacterized protein. (214 aa)
	A0A060ZEE0	Uncharacterized protein. (189 aa)
	A0A060ZBV2	Uncharacterized protein. (200 aa)
	A0A060ZFQ8	Uncharacterized protein. (447 aa)
	A0A060ZA74	WH2 domain-containing protein. (270 aa)
	A0A060Z4H0	Uncharacterized protein. (176 aa)
	A0A060YYE7	Uncharacterized protein. (174 aa)
	A0A060YXP8	Ras-GAP domain-containing protein. (1222 aa)
	A0A060XAI9	Uncharacterized protein. (176 aa)
	A0A060XG73	Uncharacterized protein. (355 aa)
	A0A060XIY1	Uncharacterized protein. (191 aa)
	A0A060XMS5	CRAL-TRIO domain-containing protein. (744 aa)
	A0A060XPL2	Uncharacterized protein. (56 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060WKP7	A0A060WXY2	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A060WKP7	A0A060XAI9	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A060WKP7	A0A060XIY1	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A060WKP7	A0A060XWC7	Uncharacterized protein.	Uncharacterized protein.	0.547
A0A060WTK4	A0A060WXJ3	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060WTK4	A0A060WXY2	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A060WTK4	A0A060XAI9	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A060WTK4	A0A060XIY1	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A060WTK4	A0A060XSG7	Uncharacterized protein.	DUF4745 domain-containing protein.	0.563
A0A060WTK4	A0A060XWC7	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A060WTK4	A0A060XX99	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060WTK4	A0A060Y5S7	Uncharacterized protein.	DUF4745 domain-containing protein.	0.563
A0A060WTK4	A0A060YCT2	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060WTK4	A0A060YFG8	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060WTK4	A0A060Z4H0	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060WTK4	A0A060ZA74	Uncharacterized protein.	WH2 domain-containing protein.	0.944
A0A060WXJ3	A0A060WTK4	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060WXJ3	A0A060WXY2	Uncharacterized protein.	Uncharacterized protein.	0.635
A0A060WXJ3	A0A060XAI9	Uncharacterized protein.	Uncharacterized protein.	0.635
A0A060WXJ3	A0A060XIY1	Uncharacterized protein.	Uncharacterized protein.	0.635