16 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060XZY4	MPN domain-containing protein. (2338 aa)
	A0A060W191	WD_REPEATS_REGION domain-containing protein. (506 aa)
	A0A060W5R3	Uncharacterized protein. (229 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (110 aa)
	A0A060WC50	Uncharacterized protein. (951 aa)
	A0A060WMR8	Uncharacterized protein. (647 aa)
	A0A060WT08	Uncharacterized protein. (423 aa)
	A0A060WVM8	Uncharacterized protein. (584 aa)
	A0A060XCQ8	WD_REPEATS_REGION domain-containing protein. (126 aa)
	A0A060XHA7	MPN domain-containing protein. (2359 aa)
	A0A060XQA1	Uncharacterized protein. (430 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	A0A060YUN3	Uncharacterized protein. (179 aa)
	LSM4-2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	A0A060Z6W4	Uncharacterized protein. (330 aa)
	PAFAH1B1-4	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration. (990 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060W191	A0A060WC50	A0A060W191	A0A060WC50	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.898
A0A060W191	A0A060WMR8	A0A060W191	A0A060WMR8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.898
A0A060W191	A0A060XHA7	A0A060W191	A0A060XHA7	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.984
A0A060W191	A0A060XZY4	A0A060W191	A0A060XZY4	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.984
A0A060W191	A0A060YUN3	A0A060W191	A0A060YUN3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.668
A0A060W191	LSM3	A0A060W191	A0A060YMJ7	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.972
A0A060W191	LSM4	A0A060W191	A0A060W6N1	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.969
A0A060W191	LSM4-2	A0A060W191	A0A060Z294	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.969
A0A060W191	PAFAH1B1-4	A0A060W191	A0A060XMJ3	WD_REPEATS_REGION domain-containing protein.	Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration.	0.693
A0A060W5R3	A0A060WC50	A0A060W5R3	A0A060WC50	Uncharacterized protein.	Uncharacterized protein.	0.811
A0A060W5R3	A0A060WMR8	A0A060W5R3	A0A060WMR8	Uncharacterized protein.	Uncharacterized protein.	0.811
A0A060W5R3	A0A060WT08	A0A060W5R3	A0A060WT08	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A060W5R3	A0A060XHA7	A0A060W5R3	A0A060XHA7	Uncharacterized protein.	MPN domain-containing protein.	0.621
A0A060W5R3	A0A060XQA1	A0A060W5R3	A0A060XQA1	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A060W5R3	A0A060XZY4	A0A060W5R3	A0A060XZY4	Uncharacterized protein.	MPN domain-containing protein.	0.621
A0A060W5R3	A0A060Z6W4	A0A060W5R3	A0A060Z6W4	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A060W5R3	LSM3	A0A060W5R3	A0A060YMJ7	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.500
A0A060WC50	A0A060W191	A0A060WC50	A0A060W191	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.898
A0A060WC50	A0A060W5R3	A0A060WC50	A0A060W5R3	Uncharacterized protein.	Uncharacterized protein.	0.811
A0A060WC50	A0A060WVM8	A0A060WC50	A0A060WVM8	Uncharacterized protein.	Uncharacterized protein.	0.811