41 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060XDZ2	WH2 domain-containing protein. (517 aa)
	A0A060XFB9	Uncharacterized protein. (577 aa)
	A0A060XMK3	Uncharacterized protein. (529 aa)
	A0A060XPL2	Uncharacterized protein. (56 aa)
	A0A060XQ48	SH3 domain-containing protein. (379 aa)
	A0A060XT15	WH2 domain-containing protein. (486 aa)
	A0A060XX99	Uncharacterized protein. (438 aa)
	A0A060Y073	SRA1 domain-containing protein. (247 aa)
	A0A060YAY6	WH2 domain-containing protein. (478 aa)
	A0A060YCB0	SH3 domain-containing protein. (100 aa)
	A0A060YCT2	Uncharacterized protein. (150 aa)
	A0A060YFG8	Uncharacterized protein. (107 aa)
	A0A060YHV4	Uncharacterized protein. (408 aa)
	A0A060YLC8	Uncharacterized protein. (234 aa)
	A0A060YN84	Uncharacterized protein. (91 aa)
	A0A060YSR4	Uncharacterized protein. (165 aa)
	A0A060YT05	Uncharacterized protein. (291 aa)
	A0A060YWN7	Uncharacterized protein. (237 aa)
	A0A060YXA7	Uncharacterized protein. (315 aa)
	A0A060Z3G0	Uncharacterized protein. (166 aa)
	A0A060Z441	Uncharacterized protein. (172 aa)
	A0A060Z4H0	Uncharacterized protein. (176 aa)
	A0A060Z4J2	Uncharacterized protein. (75 aa)
	A0A060ZFI6	Uncharacterized protein. (280 aa)
	A0A060ZA74	WH2 domain-containing protein. (270 aa)
	A0A060VMX5	SH3 domain-containing protein. (130 aa)
	A0A060VTF6	t-SNARE coiled-coil homology domain-containing protein. (228 aa)
	A0A060W3Z5	Uncharacterized protein. (361 aa)
	A0A060W4I5	Uncharacterized protein. (120 aa)
	A0A060W4P5	Uncharacterized protein. (465 aa)
	A0A060WAU9	Uncharacterized protein. (75 aa)
	A0A060WJC7	SH3 domain-containing protein. (104 aa)
	A0A060WJW2	t-SNARE coiled-coil homology domain-containing protein. (242 aa)
	A0A060WM85	SRA1 domain-containing protein. (244 aa)
	A0A060WRC2	Abi_HHR domain-containing protein. (207 aa)
	A0A060WTK4	Uncharacterized protein. (572 aa)
	A0A060WUA1	Uncharacterized protein. (99 aa)
	A0A060WUL7	Uncharacterized protein. (455 aa)
	A0A060WWI2	Uncharacterized protein. (1132 aa)
	A0A060WXH5	Uncharacterized protein. (162 aa)
	A0A060WXJ3	Uncharacterized protein. (174 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VMX5	A0A060W3Z5	SH3 domain-containing protein.	Uncharacterized protein.	0.949
A0A060VMX5	A0A060W4I5	SH3 domain-containing protein.	Uncharacterized protein.	0.949
A0A060VMX5	A0A060W4P5	SH3 domain-containing protein.	Uncharacterized protein.	0.949
A0A060VMX5	A0A060WAU9	SH3 domain-containing protein.	Uncharacterized protein.	0.974
A0A060VMX5	A0A060WTK4	SH3 domain-containing protein.	Uncharacterized protein.	0.766
A0A060VMX5	A0A060WUA1	SH3 domain-containing protein.	Uncharacterized protein.	0.808
A0A060VMX5	A0A060WWI2	SH3 domain-containing protein.	Uncharacterized protein.	0.949
A0A060VMX5	A0A060WXH5	SH3 domain-containing protein.	Uncharacterized protein.	0.930
A0A060VMX5	A0A060WXJ3	SH3 domain-containing protein.	Uncharacterized protein.	0.860
A0A060VMX5	A0A060XDZ2	SH3 domain-containing protein.	WH2 domain-containing protein.	0.949
A0A060VMX5	A0A060XFB9	SH3 domain-containing protein.	Uncharacterized protein.	0.877
A0A060VMX5	A0A060XPL2	SH3 domain-containing protein.	Uncharacterized protein.	0.764
A0A060VMX5	A0A060XQ48	SH3 domain-containing protein.	SH3 domain-containing protein.	0.767
A0A060VMX5	A0A060XT15	SH3 domain-containing protein.	WH2 domain-containing protein.	0.952
A0A060VMX5	A0A060XX99	SH3 domain-containing protein.	Uncharacterized protein.	0.860
A0A060VMX5	A0A060YAY6	SH3 domain-containing protein.	WH2 domain-containing protein.	0.952
A0A060VMX5	A0A060YCT2	SH3 domain-containing protein.	Uncharacterized protein.	0.860
A0A060VMX5	A0A060YFG8	SH3 domain-containing protein.	Uncharacterized protein.	0.860
A0A060VMX5	A0A060YHV4	SH3 domain-containing protein.	Uncharacterized protein.	0.939
A0A060VMX5	A0A060YLC8	SH3 domain-containing protein.	Uncharacterized protein.	0.949