34 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060VMD7	Uncharacterized protein. (223 aa)
	A0A060VN92	Uncharacterized protein. (116 aa)
	A0A060VTT0	Uncharacterized protein. (508 aa)
	A0A060VUN2	Uncharacterized protein. (239 aa)
	A0A060W113	Uncharacterized protein. (220 aa)
	A0A060W478	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (258 aa)
	A0A060W4W7	Uncharacterized protein. (131 aa)
	A0A060W7J6	Uncharacterized protein. (131 aa)
	A0A060W9Q8	Uncharacterized protein. (223 aa)
	A0A060WB61	Uncharacterized protein. (160 aa)
	A0A060WDS2	Uncharacterized protein. (322 aa)
	A0A060WHB7	Uncharacterized protein. (207 aa)
	A0A060WJ95	Vta1 domain-containing protein. (105 aa)
	A0A060WR05	Uncharacterized protein. (222 aa)
	A0A060WSB5	Uncharacterized protein. (241 aa)
	A0A060WXG6	Uncharacterized protein. (1597 aa)
	A0A060X581	Uncharacterized protein. (1718 aa)
	A0A060XCL2	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (223 aa)
	A0A060XXB6	Uncharacterized protein. (209 aa)
	A0A060XYD9	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (223 aa)
	A0A060XZI4	Uncharacterized protein. (38 aa)
	A0A060Y269	Uncharacterized protein. (131 aa)
	A0A060YA98	VHS domain-containing protein. (424 aa)
	A0A060YIS2	Uncharacterized protein. (220 aa)
	A0A060YIW9	GLUE N-terminal domain-containing protein. (165 aa)
	A0A060YM34	Uncharacterized protein. (174 aa)
	A0A060YWK4	Uncharacterized protein. (220 aa)
	A0A060YWU4	Uncharacterized protein. (56 aa)
	A0A060YZF8	Uncharacterized protein. (290 aa)
	A0A060Z1M0	Uncharacterized protein. (157 aa)
	A0A060Z3F5	Uncharacterized protein. (189 aa)
	A0A060Z7V2	Uncharacterized protein. (107 aa)
	A0A060Z9S5	Uncharacterized protein. (91 aa)
	TM50A	Transmembrane protein 50A. (160 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VMD7	A0A060VTT0	A0A060VMD7	A0A060VTT0	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A060VMD7	A0A060VUN2	A0A060VMD7	A0A060VUN2	Uncharacterized protein.	Uncharacterized protein.	0.833
A0A060VMD7	A0A060W478	A0A060VMD7	A0A060W478	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.954
A0A060VMD7	A0A060WDS2	A0A060VMD7	A0A060WDS2	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A060VMD7	A0A060WHB7	A0A060VMD7	A0A060WHB7	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A060VMD7	A0A060WJ95	A0A060VMD7	A0A060WJ95	Uncharacterized protein.	Vta1 domain-containing protein.	0.904
A0A060VMD7	A0A060WSB5	A0A060VMD7	A0A060WSB5	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A060VMD7	A0A060WXG6	A0A060VMD7	A0A060WXG6	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A060VMD7	A0A060X581	A0A060VMD7	A0A060X581	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A060VMD7	A0A060XCL2	A0A060VMD7	A0A060XCL2	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.825
A0A060VMD7	A0A060XXB6	A0A060VMD7	A0A060XXB6	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A060VMD7	A0A060XYD9	A0A060VMD7	A0A060XYD9	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.825
A0A060VMD7	A0A060YIS2	A0A060VMD7	A0A060YIS2	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A060VMD7	A0A060YIW9	A0A060VMD7	A0A060YIW9	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.935
A0A060VMD7	A0A060YM34	A0A060VMD7	A0A060YM34	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A060VMD7	A0A060YWK4	A0A060VMD7	A0A060YWK4	Uncharacterized protein.	Uncharacterized protein.	0.973
A0A060VMD7	A0A060YWU4	A0A060VMD7	A0A060YWU4	Uncharacterized protein.	Uncharacterized protein.	0.935
A0A060VMD7	A0A060YZF8	A0A060VMD7	A0A060YZF8	Uncharacterized protein.	Uncharacterized protein.	0.962
A0A060VMD7	A0A060Z1M0	A0A060VMD7	A0A060Z1M0	Uncharacterized protein.	Uncharacterized protein.	0.979
A0A060VMD7	A0A060Z3F5	A0A060VMD7	A0A060Z3F5	Uncharacterized protein.	Uncharacterized protein.	0.962