(108 nodes) Cellular response to decreased oxygen levels network (Oncorhynchus mykiss)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060VNJ4	Homeobox domain-containing protein. (202 aa)
	A0A060VPG8	Homeobox domain-containing protein. (202 aa)
	A0A060VQ15	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (260 aa)
	A0A060VT78	Uncharacterized protein. (742 aa)
	A0A060VT79	BH4_2 domain-containing protein. (192 aa)
	A0A060VUF7	RRM domain-containing protein. (364 aa)
	A0A060VUI4	CEBP1_N domain-containing protein. (233 aa)
	A0A060VWV9	BH4_2 domain-containing protein. (224 aa)
	A0A060VXA9	Uncharacterized protein. (344 aa)
	A0A060VYU7	Uncharacterized protein. (147 aa)
	A0A060VZD9	Uncharacterized protein. (1032 aa)
	A0A060VZE5	Uncharacterized protein. (533 aa)
	A0A060W009	Deacetylase sirtuin-type domain-containing protein. (766 aa)
	A0A060W0K7	Eukaryotic elongation factor 2 kinase. (746 aa)
	A0A060W0M9	Uncharacterized protein. (211 aa)
	A0A060W1S5	Deacetylase sirtuin-type domain-containing protein. (728 aa)
	A0A060W2P4	Uncharacterized protein. (344 aa)
	AK3	GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities. (249 aa)
	A0A060W766	EGF-like domain-containing protein. (477 aa)
	A0A060W8P9	Uncharacterized protein. (156 aa)
	A0A060W8W7	Uncharacterized protein. (147 aa)
	A0A060W974	Uncharacterized protein. (560 aa)
	A0A060WDU0	Fe2OG dioxygenase domain-containing protein. (248 aa)
	A0A060WGM4	Uncharacterized protein. (334 aa)
	A0A060WH01	Uncharacterized protein. (249 aa)
	A0A060WKF5	Uncharacterized protein. (631 aa)
	A0A060WL45	EGF-like domain-containing protein. (607 aa)
	A0A060WLM4	WD_REPEATS_REGION domain-containing protein. (427 aa)
	A0A060WMG8	Fe2OG dioxygenase domain-containing protein. (121 aa)
	A0A060WMY9	Uncharacterized protein. (485 aa)
	A0A060WP61	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1560 aa)
	A0A060WPB0	Uncharacterized protein. (443 aa)
	A0A060WPM5	Uncharacterized protein. (1271 aa)
	A0A060WPV0	BH4_2 domain-containing protein. (190 aa)
	A0A060WPY0	Uncharacterized protein. (171 aa)
	A0A060WQB0	EGF-like domain-containing protein. (607 aa)
	A0A060WQQ5	Uncharacterized protein. (714 aa)
	A0A060WRK3	Uncharacterized protein. (1235 aa)
	A0A060WSR8	Uncharacterized protein. (491 aa)
	A0A060WXA8	BZIP domain-containing protein. (613 aa)
	A0A060WYG3	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (251 aa)
	A0A060WZL8	Uncharacterized protein. (862 aa)
	A0A060X015	Uncharacterized protein. (1494 aa)
	A0A060X0Y4	Uncharacterized protein. (132 aa)
	A0A060X176	Uncharacterized protein. (240 aa)
	A0A060X1E9	Uncharacterized protein. (574 aa)
	A0A060X274	PAS domain-containing protein. (626 aa)
	A0A060X462	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1096 aa)
	A0A060X4V9	Uncharacterized protein. (414 aa)
	A0A060X502	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (261 aa)
	A0A060X6A3	Uncharacterized protein. (575 aa)
	A0A060X6L7	Uncharacterized protein. (72 aa)
	A0A060X6P0	Protein kinase domain-containing protein. (544 aa)
	A0A060X7I3	Uncharacterized protein. (629 aa)
	A0A060X871	Uncharacterized protein. (319 aa)
	A0A060X9H9	Uncharacterized protein. (694 aa)
	A0A060X9Q4	Serine/threonine-protein kinase TOR. (1444 aa)
	A0A060X9R4	ADD_DNMT3 domain-containing protein. (413 aa)
	A0A060XDR3	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (454 aa)
	A0A060XE06	AH domain-containing protein. (323 aa)
	A0A060XFS2	Uncharacterized protein. (523 aa)
	A0A060XJ73	Uncharacterized protein. (110 aa)
	A0A060XJC8	Fe2OG dioxygenase domain-containing protein. (552 aa)
	A0A060XKD2	NAD-dependent protein deacetylase; NAD-dependent protein deacetylase. (307 aa)
	A0A060XKV6	JmjC domain-containing protein. (357 aa)
	A0A060XLQ1	Uncharacterized protein. (229 aa)
	A0A060XQB7	WD_REPEATS_REGION domain-containing protein. (440 aa)
	A0A060XQH3	PAS domain-containing protein. (736 aa)
	A0A060XQM9	BZIP domain-containing protein. (614 aa)
	A0A060XXW4	Uncharacterized protein. (143 aa)
	A0A060XZ23	Uncharacterized protein. (75 aa)
	A0A060XZI9	Fibronectin type-III domain-containing protein. (228 aa)
	A0A060Y144	Uncharacterized protein. (172 aa)
	A0A060Y2T6	Uncharacterized protein. (256 aa)
	A0A060Y671	Uncharacterized protein. (755 aa)
	A0A060Y6Z5	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (150 aa)
	A0A060Y7V9	Uncharacterized protein. (77 aa)
	A0A060Y8C8	Uncharacterized protein. (82 aa)
	A0A060Y946	Uncharacterized protein. (197 aa)
	A0A060YAB5	HIF-1a_CTAD domain-containing protein. (210 aa)
	A0A060YAQ9	Fe2OG dioxygenase domain-containing protein. (124 aa)
	A0A060YB77	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (282 aa)
	A0A060YBG7	Uncharacterized protein. (164 aa)
	A0A060YBR4	Stork_head domain-containing protein. (952 aa)
	A0A060YDP3	Uncharacterized protein. (187 aa)
	A0A060YF64	PHD-type domain-containing protein. (332 aa)
	A0A060YIE2	Uncharacterized protein. (172 aa)
	A0A060YL19	JmjC domain-containing protein. (215 aa)
	A0A060YL91	Uncharacterized protein. (480 aa)
	A0A060YMY9	Uncharacterized protein. (125 aa)
	A0A060YN36	Alpha-type protein kinase domain-containing protein. (769 aa)
	A0A060YN96	Stork_head domain-containing protein. (959 aa)
	A0A060YNM4	BHLH domain-containing protein. (173 aa)
	A0A060YU15	AH domain-containing protein. (246 aa)
	A0A060YU62	EGF-like domain-containing protein. (490 aa)
	A0A060YVB7	ADK_lid domain-containing protein; Belongs to the adenylate kinase family. (187 aa)
	A0A060Z0I1	Uncharacterized protein. (129 aa)
	A0A060Z2I7	Uncharacterized protein. (178 aa)
	A0A060Z772	PDZ domain-containing protein. (160 aa)
	A0A060Z8V3	Uncharacterized protein. (625 aa)
	A0A060Z9B6	EpoR_lig-bind domain-containing protein. (173 aa)
	A0A060ZBA5	RRM domain-containing protein. (234 aa)
	A0A060ZC93	MYND-type domain-containing protein. (269 aa)
	A0A060ZCW5	RRM domain-containing protein. (299 aa)
	A0A060ZEJ0	PWWP domain-containing protein. (194 aa)
	A0A060ZHH4	Uncharacterized protein. (160 aa)
	A0A061A6W9	Uncharacterized protein. (180 aa)
	A0A061AE93	RRM domain-containing protein. (187 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VT78	A0A060VT79	A0A060VT78	A0A060VT79	Uncharacterized protein.	BH4_2 domain-containing protein.	0.424
A0A060VT78	A0A060VWV9	A0A060VT78	A0A060VWV9	Uncharacterized protein.	BH4_2 domain-containing protein.	0.424
A0A060VT78	A0A060VXA9	A0A060VT78	A0A060VXA9	Uncharacterized protein.	Uncharacterized protein.	0.892
A0A060VT78	A0A060VZE5	A0A060VT78	A0A060VZE5	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A060VT78	A0A060W009	A0A060VT78	A0A060W009	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.732
A0A060VT78	A0A060W0M9	A0A060VT78	A0A060W0M9	Uncharacterized protein.	Uncharacterized protein.	0.532
A0A060VT78	A0A060W1S5	A0A060VT78	A0A060W1S5	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.732
A0A060VT78	A0A060W2P4	A0A060VT78	A0A060W2P4	Uncharacterized protein.	Uncharacterized protein.	0.892
A0A060VT78	A0A060WDU0	A0A060VT78	A0A060WDU0	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.892
A0A060VT78	A0A060WGM4	A0A060VT78	A0A060WGM4	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A060VT78	A0A060WKF5	A0A060VT78	A0A060WKF5	Uncharacterized protein.	Uncharacterized protein.	0.835
A0A060VT78	A0A060WMG8	A0A060VT78	A0A060WMG8	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.892
A0A060VT78	A0A060WMY9	A0A060VT78	A0A060WMY9	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A060VT78	A0A060WPB0	A0A060VT78	A0A060WPB0	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A060VT78	A0A060WPM5	A0A060VT78	A0A060WPM5	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A060VT78	A0A060WPV0	A0A060VT78	A0A060WPV0	Uncharacterized protein.	BH4_2 domain-containing protein.	0.424
A0A060VT78	A0A060WPY0	A0A060VT78	A0A060WPY0	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A060VT78	A0A060WRK3	A0A060VT78	A0A060WRK3	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A060VT78	A0A060X4V9	A0A060VT78	A0A060X4V9	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A060VT78	A0A060X7I3	A0A060VT78	A0A060X7I3	Uncharacterized protein.	Uncharacterized protein.	0.834