58 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060VVF3	Uncharacterized protein. (63 aa)
	A0A060W0K7	Eukaryotic elongation factor 2 kinase. (746 aa)
	A0A060W4V8	ADF-H domain-containing protein. (610 aa)
	A0A060W913	Uncharacterized protein. (110 aa)
	A0A060WCG1	Uncharacterized protein. (667 aa)
	A0A060WDX4	Uncharacterized protein. (333 aa)
	A0A060WEY3	Uncharacterized protein. (579 aa)
	A0A060WFX2	ANK_REP_REGION domain-containing protein. (567 aa)
	A0A060WG06	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (288 aa)
	A0A060WR30	Uncharacterized protein. (461 aa)
	A0A060WRC3	IMD domain-containing protein. (114 aa)
	A0A060WTK4	Uncharacterized protein. (572 aa)
	A0A060WV66	Homeobox protein cut-like. (1524 aa)
	A0A060WYR7	SH3 domain-containing protein. (587 aa)
	A0A060WZ83	Uncharacterized protein. (725 aa)
	A0A060X0Q6	Uncharacterized protein. (567 aa)
	A0A060X6K1	Uncharacterized protein. (690 aa)
	A0A060X7L4	Uncharacterized protein. (525 aa)
	A0A060X7Y0	ANK_REP_REGION domain-containing protein. (1039 aa)
	A0A060X7Y3	Uncharacterized protein. (454 aa)
	A0A060X835	Uncharacterized protein. (1092 aa)
	A0A060X842	Uncharacterized protein. (292 aa)
	A0A060X875	SH3 domain-containing protein. (98 aa)
	A0A060X8Q8	EGF-like domain-containing protein. (911 aa)
	A0A060XE66	C1q domain-containing protein. (940 aa)
	A0A060XE88	Uncharacterized protein. (141 aa)
	A0A060XFI6	Uncharacterized protein. (203 aa)
	A0A060XHE5	C1q domain-containing protein. (188 aa)
	A0A060XI30	Uncharacterized protein. (737 aa)
	A0A060XPL2	Uncharacterized protein. (56 aa)
	A0A060XQ35	Uncharacterized protein. (775 aa)
	A0A060XQ48	SH3 domain-containing protein. (379 aa)
	A0A060XQM8	Uncharacterized protein. (684 aa)
	A0A060XSH2	Uncharacterized protein. (2584 aa)
	A0A060Y251	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (221 aa)
	A0A060Y8A8	HECT domain-containing protein. (616 aa)
	A0A060YA20	Uncharacterized protein. (375 aa)
	A0A060YA70	Uncharacterized protein. (221 aa)
	A0A060YAC4	Uncharacterized protein. (450 aa)
	A0A060YAV8	Homeobox protein cut-like. (1260 aa)
	A0A060YB89	Helicase ATP-binding domain-containing protein. (456 aa)
	A0A060YH17	Uncharacterized protein. (81 aa)
	A0A060YHE5	Uncharacterized protein. (268 aa)
	A0A060YHX1	HECT domain-containing protein. (189 aa)
	A0A061AE29	Uncharacterized protein. (113 aa)
	A0A060YLM0	Uncharacterized protein. (183 aa)
	A0A060YLJ4	Uncharacterized protein. (131 aa)
	A0A060YMG2	Uncharacterized protein. (160 aa)
	A0A060YN36	Alpha-type protein kinase domain-containing protein. (769 aa)
	A0A060YUA4	Uncharacterized protein. (604 aa)
	A0A060YZG1	SH3 domain-containing protein. (242 aa)
	A0A060Z035	Uncharacterized protein. (463 aa)
	A0A060Z414	Uncharacterized protein. (85 aa)
	A0A060Z9R6	ANK_REP_REGION domain-containing protein. (191 aa)
	A0A061A8A1	ANK_REP_REGION domain-containing protein. (147 aa)
	A0A061ADZ0	EGF-like domain-containing protein. (220 aa)
	A0A060VP21	Ephrin RBD domain-containing protein; Belongs to the ephrin family. (225 aa)
	A0A060VPU5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (226 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060WFX2	A0A060X6K1	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.410
A0A060WFX2	A0A060Z035	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.424
A0A060WRC3	A0A060WTK4	IMD domain-containing protein.	Uncharacterized protein.	0.913
A0A060WRC3	A0A060XPL2	IMD domain-containing protein.	Uncharacterized protein.	0.913
A0A060WRC3	A0A060XQ48	IMD domain-containing protein.	SH3 domain-containing protein.	0.913
A0A060WTK4	A0A060WRC3	Uncharacterized protein.	IMD domain-containing protein.	0.913
A0A060X6K1	A0A060WFX2	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.410
A0A060X6K1	A0A060X7Y0	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.423
A0A060X7L4	A0A060XFI6	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A060X7L4	A0A060YMG2	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A060X7Y0	A0A060X6K1	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.423
A0A060X835	A0A060XE88	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A060X835	A0A060XFI6	Uncharacterized protein.	Uncharacterized protein.	0.510
A0A060X8Q8	A0A060XE88	EGF-like domain-containing protein.	Uncharacterized protein.	0.537
A0A060X8Q8	A0A060XFI6	EGF-like domain-containing protein.	Uncharacterized protein.	0.533
A0A060XE88	A0A060X835	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A060XE88	A0A060X8Q8	Uncharacterized protein.	EGF-like domain-containing protein.	0.537
A0A060XE88	A0A060XFI6	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A060XE88	A0A060YLJ4	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A060XE88	A0A060YMG2	Uncharacterized protein.	Uncharacterized protein.	0.499