38 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060YS42	IMD domain-containing protein. (94 aa)
	A0A060VX50	CABIT domain-containing protein. (796 aa)
	A0A060WAB8	Uncharacterized protein; Belongs to the peptidase C19 family. (708 aa)
	A0A060WEG4	CABIT domain-containing protein. (859 aa)
	A0A060WRC3	IMD domain-containing protein. (114 aa)
	A0A060WTK4	Uncharacterized protein. (572 aa)
	A0A060WU38	Uncharacterized protein. (176 aa)
	A0A060WXX7	SH3 domain-containing protein. (297 aa)
	A0A060WYW7	Uncharacterized protein. (479 aa)
	A0A060X0M5	GYF domain-containing protein. (812 aa)
	A0A060X9E5	Uncharacterized protein. (211 aa)
	A0A060X9Y6	GYF domain-containing protein. (1419 aa)
	A0A060XER0	Uncharacterized protein; Belongs to the peptidase C19 family. (707 aa)
	A0A060XKK3	Uncharacterized protein. (715 aa)
	A0A060XL96	Uncharacterized protein. (335 aa)
	A0A060XPL2	Uncharacterized protein. (56 aa)
	A0A060XQ48	SH3 domain-containing protein. (379 aa)
	A0A060XSA2	GYF domain-containing protein. (1071 aa)
	A0A060XVP1	Uncharacterized protein. (905 aa)
	A0A060XXQ0	GYF domain-containing protein. (959 aa)
	A0A060XYI2	GYF domain-containing protein. (943 aa)
	A0A060XYM2	Uncharacterized protein. (63 aa)
	A0A060XYW8	Uncharacterized protein. (549 aa)
	A0A060XZL1	Uncharacterized protein; Belongs to the peptidase C19 family. (888 aa)
	A0A060Y5J2	SH3 domain-containing protein. (362 aa)
	A0A060Y6Q2	Uncharacterized protein. (1083 aa)
	A0A060Y891	Uncharacterized protein; Belongs to the peptidase C19 family. (959 aa)
	A0A060Y8K2	Uncharacterized protein. (121 aa)
	A0A060YFQ3	GYF domain-containing protein. (863 aa)
	A0A060YG23	Uncharacterized protein. (194 aa)
	A0A060YNX3	Uncharacterized protein. (435 aa)
	A0A060YQF1	CAP-Gly domain-containing protein. (336 aa)
	A0A060YS57	Uncharacterized protein. (61 aa)
	A0A060YSW5	SH3 domain-containing protein. (412 aa)
	A0A060YT02	Uncharacterized protein. (403 aa)
	A0A060Z740	Uncharacterized protein. (268 aa)
	A0A060ZFV3	IMD domain-containing protein. (120 aa)
	A0A060ZH58	IMD domain-containing protein. (154 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060WAB8	A0A060XVP1	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein.	0.846
A0A060WAB8	A0A060XZL1	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.841
A0A060WAB8	A0A060Y891	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.841
A0A060WRC3	A0A060WTK4	IMD domain-containing protein.	Uncharacterized protein.	0.913
A0A060WRC3	A0A060WXX7	IMD domain-containing protein.	SH3 domain-containing protein.	0.945
A0A060WRC3	A0A060WYW7	IMD domain-containing protein.	Uncharacterized protein.	0.957
A0A060WRC3	A0A060X9E5	IMD domain-containing protein.	Uncharacterized protein.	0.956
A0A060WRC3	A0A060XPL2	IMD domain-containing protein.	Uncharacterized protein.	0.913
A0A060WRC3	A0A060XQ48	IMD domain-containing protein.	SH3 domain-containing protein.	0.913
A0A060WRC3	A0A060XYW8	IMD domain-containing protein.	Uncharacterized protein.	0.947
A0A060WRC3	A0A060Y5J2	IMD domain-containing protein.	SH3 domain-containing protein.	0.947
A0A060WRC3	A0A060YS42	IMD domain-containing protein.	IMD domain-containing protein.	0.957
A0A060WRC3	A0A060YS57	IMD domain-containing protein.	Uncharacterized protein.	0.947
A0A060WRC3	A0A060YSW5	IMD domain-containing protein.	SH3 domain-containing protein.	0.947
A0A060WRC3	A0A060ZFV3	IMD domain-containing protein.	IMD domain-containing protein.	0.964
A0A060WRC3	A0A060ZH58	IMD domain-containing protein.	IMD domain-containing protein.	0.948
A0A060WTK4	A0A060WRC3	Uncharacterized protein.	IMD domain-containing protein.	0.913
A0A060WTK4	A0A060WXX7	Uncharacterized protein.	SH3 domain-containing protein.	0.616
A0A060WTK4	A0A060WYW7	Uncharacterized protein.	Uncharacterized protein.	0.637
A0A060WTK4	A0A060X9E5	Uncharacterized protein.	Uncharacterized protein.	0.637