STRINGSTRING
A0A060VN45 A0A060VN45 A0A060VSN4 A0A060VSN4 A0A060VVL5 A0A060VVL5 A0A060VX01 A0A060VX01 A0A060VZT3 A0A060VZT3 A0A060W298 A0A060W298 A0A060W2N8 A0A060W2N8 A0A060WK69 A0A060WK69 SNRPC SNRPC A0A060WKQ5 A0A060WKQ5 SNRPC-2 SNRPC-2 A0A060WUK6 A0A060WUK6 SNRPC-3 SNRPC-3 A0A060WZK4 A0A060WZK4 A0A060WZZ4 A0A060WZZ4 A0A060X0L6 A0A060X0L6 A0A060X4G3 A0A060X4G3 A0A060X7F9 A0A060X7F9 A0A060XHJ1 A0A060XHJ1 A0A060XMQ3 A0A060XMQ3 A0A060XTK4 A0A060XTK4 A0A060XWK1 A0A060XWK1 A0A060XWQ5 A0A060XWQ5 A0A060XX71 A0A060XX71 A0A060Y4E4 A0A060Y4E4 A0A060Y502 A0A060Y502 A0A060Y5M4 A0A060Y5M4 A0A060Y866 A0A060Y866 A0A060Y8Q4 A0A060Y8Q4 A0A060YA89 A0A060YA89 A0A060YAP7 A0A060YAP7 A0A060YM69 A0A060YM69 A0A060YPM4 A0A060YPM4 A0A060Z5B9 A0A060Z5B9 A0A060ZHK1 A0A060ZHK1 LSM7 LSM7 LSM7-2 LSM7-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A060VN45Uncharacterized protein. (790 aa)
A0A060VSN4Uncharacterized protein. (208 aa)
A0A060VVL5Uncharacterized protein. (230 aa)
A0A060VX01Matrin-type domain-containing protein. (308 aa)
A0A060VZT3Uncharacterized protein. (80 aa)
A0A060W298Uncharacterized protein. (426 aa)
A0A060W2N8U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (468 aa)
A0A060WK69Uncharacterized protein. (792 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (157 aa)
A0A060WKQ5Uncharacterized protein. (789 aa)
SNRPC-2U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (156 aa)
A0A060WUK6Uncharacterized protein. (341 aa)
SNRPC-3U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (157 aa)
A0A060WZK4Uncharacterized protein. (823 aa)
A0A060WZZ4U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (246 aa)
A0A060X0L6Uncharacterized protein. (123 aa)
A0A060X4G3Small nuclear ribonucleoprotein-associated protein. (229 aa)
A0A060X7F9RRM domain-containing protein. (144 aa)
A0A060XHJ1Matrin-type domain-containing protein. (308 aa)
A0A060XMQ3U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (480 aa)
A0A060XTK4SF3b1 domain-containing protein. (1328 aa)
A0A060XWK1Uncharacterized protein. (726 aa)
A0A060XWQ5SF3b1 domain-containing protein. (1326 aa)
A0A060XX71Uncharacterized protein. (185 aa)
A0A060Y4E4Uncharacterized protein. (670 aa)
A0A060Y502Small nuclear ribonucleoprotein G. (76 aa)
A0A060Y5M4Uncharacterized protein. (721 aa)
A0A060Y866Uncharacterized protein. (190 aa)
A0A060Y8Q4Uncharacterized protein. (464 aa)
A0A060YA89RRM domain-containing protein. (269 aa)
A0A060YAP7Uncharacterized protein. (460 aa)
A0A060YM69U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (468 aa)
A0A060YPM4Uncharacterized protein. (454 aa)
A0A060Z5B9Uncharacterized protein. (217 aa)
A0A060ZHK1Uncharacterized protein. (161 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (107 aa)
LSM7-2U6 snRNA-associated Sm-like protein LSm7. (111 aa)
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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