19 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060ZAN8	SH3_12 domain-containing protein. (181 aa)
	A0A060VQQ0	Uncharacterized protein. (396 aa)
	A0A060VZQ2	Uncharacterized protein. (408 aa)
	A0A060W270	Uncharacterized protein. (245 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	A0A060W4S0	HRDC domain-containing protein. (885 aa)
	A0A060WS68	Nudix hydrolase domain-containing protein. (336 aa)
	A0A060WSI6	DCP2 domain-containing protein. (72 aa)
	A0A060X3J5	Uncharacterized protein. (582 aa)
	A0A060XGD6	Uncharacterized protein. (496 aa)
	A0A060XHG6	TAN domain-containing protein. (807 aa)
	LSM1-2	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (139 aa)
	LSM1-3	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	A0A060YA14	Uncharacterized protein. (444 aa)
	A0A060YBQ3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1143 aa)
	A0A060YQW7	Uncharacterized protein. (1494 aa)
	A0A060YSG5	Uncharacterized protein. (323 aa)
	A0A060Z5B1	Uncharacterized protein. (255 aa)
	A0A060Z8V1	Uncharacterized protein. (257 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060W270	A0A060W4S0	A0A060W270	A0A060W4S0	Uncharacterized protein.	HRDC domain-containing protein.	0.999
A0A060W270	A0A060WS68	A0A060W270	A0A060WS68	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.844
A0A060W270	A0A060WSI6	A0A060W270	A0A060WSI6	Uncharacterized protein.	DCP2 domain-containing protein.	0.844
A0A060W270	A0A060YA14	A0A060W270	A0A060YA14	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A060W270	A0A060YQW7	A0A060W270	A0A060YQW7	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A060W270	A0A060YSG5	A0A060W270	A0A060YSG5	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A060W270	A0A060Z5B1	A0A060W270	A0A060Z5B1	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A060W270	A0A060Z8V1	A0A060W270	A0A060Z8V1	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A060W270	A0A060ZAN8	A0A060W270	A0A060ZAN8	Uncharacterized protein.	SH3_12 domain-containing protein.	0.874
A0A060W270	LSM1	A0A060W270	A0A060W463	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.452
A0A060W270	LSM1-2	A0A060W270	A0A060XTF9	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.452
A0A060W270	LSM1-3	A0A060W270	A0A060XYE8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.452
A0A060W4S0	A0A060W270	A0A060W4S0	A0A060W270	HRDC domain-containing protein.	Uncharacterized protein.	0.999
A0A060W4S0	A0A060WS68	A0A060W4S0	A0A060WS68	HRDC domain-containing protein.	Nudix hydrolase domain-containing protein.	0.564
A0A060W4S0	A0A060WSI6	A0A060W4S0	A0A060WSI6	HRDC domain-containing protein.	DCP2 domain-containing protein.	0.564
A0A060W4S0	A0A060YA14	A0A060W4S0	A0A060YA14	HRDC domain-containing protein.	Uncharacterized protein.	0.621
A0A060W4S0	A0A060YQW7	A0A060W4S0	A0A060YQW7	HRDC domain-containing protein.	Uncharacterized protein.	0.621
A0A060W4S0	A0A060YSG5	A0A060W4S0	A0A060YSG5	HRDC domain-containing protein.	Uncharacterized protein.	0.621
A0A060W4S0	A0A060Z5B1	A0A060W4S0	A0A060Z5B1	HRDC domain-containing protein.	Uncharacterized protein.	0.621
A0A060W4S0	A0A060Z8V1	A0A060W4S0	A0A060Z8V1	HRDC domain-containing protein.	Uncharacterized protein.	0.621