20 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060VUN2	Uncharacterized protein. (239 aa)
	A0A060WBH2	Uncharacterized protein. (220 aa)
	A0A060WEW5	Uncharacterized protein. (191 aa)
	A0A060WQW2	Uncharacterized protein. (260 aa)
	A0A060WR05	Uncharacterized protein. (222 aa)
	A0A060WSB5	Uncharacterized protein. (241 aa)
	A0A060W9Q8	Uncharacterized protein. (223 aa)
	A0A060VMY6	Uncharacterized protein. (219 aa)
	A0A060XXB6	Uncharacterized protein. (209 aa)
	A0A060VMD7	Uncharacterized protein. (223 aa)
	A0A060WT94	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (595 aa)
	A0A060VYT7	Uncharacterized protein. (220 aa)
	A0A060XSM6	Uncharacterized protein. (253 aa)
	A0A060Z2I5	Uncharacterized protein. (155 aa)
	A0A060Z0Y6	Uncharacterized protein. (121 aa)
	A0A060XZ28	Uncharacterized protein. (161 aa)
	A0A060W113	Uncharacterized protein. (220 aa)
	A0A060W2L3	Uncharacterized protein. (199 aa)
	A0A060W3H5	Uncharacterized protein. (220 aa)
	A0A060W6E2	Uncharacterized protein. (199 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VMD7	A0A060VMY6	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A060VMD7	A0A060VUN2	Uncharacterized protein.	Uncharacterized protein.	0.833
A0A060VMD7	A0A060VYT7	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A060VMD7	A0A060W2L3	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A060VMD7	A0A060W3H5	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A060VMD7	A0A060W6E2	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A060VMD7	A0A060WBH2	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A060VMD7	A0A060WEW5	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A060VMD7	A0A060WQW2	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A060VMD7	A0A060WSB5	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A060VMD7	A0A060WT94	Uncharacterized protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.801
A0A060VMD7	A0A060XSM6	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060VMD7	A0A060XXB6	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A060VMD7	A0A060XZ28	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A060VMD7	A0A060Z0Y6	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060VMD7	A0A060Z2I5	Uncharacterized protein.	Uncharacterized protein.	0.944
A0A060VMY6	A0A060VMD7	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A060VMY6	A0A060VUN2	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A060VMY6	A0A060VYT7	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A060VMY6	A0A060W113	Uncharacterized protein.	Uncharacterized protein.	0.991