33 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060ZFI6	Uncharacterized protein. (280 aa)
	A0A060Z9D0	Uncharacterized protein. (444 aa)
	A0A060Z4J2	Uncharacterized protein. (75 aa)
	A0A060Z4H0	Uncharacterized protein. (176 aa)
	A0A060YLC8	Uncharacterized protein. (234 aa)
	A0A060YN84	Uncharacterized protein. (91 aa)
	A0A060Z319	Uncharacterized protein. (278 aa)
	A0A060YXA7	Uncharacterized protein. (315 aa)
	A0A060YWN7	Uncharacterized protein. (237 aa)
	A0A060YT05	Uncharacterized protein. (291 aa)
	A0A060YSR4	Uncharacterized protein. (165 aa)
	A0A060XFB9	Uncharacterized protein. (577 aa)
	A0A060XX99	Uncharacterized protein. (438 aa)
	A0A060XMK3	Uncharacterized protein. (529 aa)
	A0A060XT15	WH2 domain-containing protein. (486 aa)
	A0A060YHV4	Uncharacterized protein. (408 aa)
	A0A060YFG8	Uncharacterized protein. (107 aa)
	A0A060YCT2	Uncharacterized protein. (150 aa)
	A0A060YAY6	WH2 domain-containing protein. (478 aa)
	A0A060Y3H9	Uncharacterized protein. (124 aa)
	A0A060Y073	SRA1 domain-containing protein. (247 aa)
	A0A060W3Z5	Uncharacterized protein. (361 aa)
	A0A060W4I5	Uncharacterized protein. (120 aa)
	A0A060W4P5	Uncharacterized protein. (465 aa)
	A0A060WAU9	Uncharacterized protein. (75 aa)
	A0A060WM85	SRA1 domain-containing protein. (244 aa)
	A0A060WUA1	Uncharacterized protein. (99 aa)
	A0A060WUL7	Uncharacterized protein. (455 aa)
	A0A060WXJ3	Uncharacterized protein. (174 aa)
	A0A060XDZ2	WH2 domain-containing protein. (517 aa)
	A0A060WWI2	Uncharacterized protein. (1132 aa)
	A0A060WXH5	Uncharacterized protein. (162 aa)
	A0A060ZA74	WH2 domain-containing protein. (270 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060W3Z5	A0A060WAU9	Uncharacterized protein.	Uncharacterized protein.	0.974
A0A060W3Z5	A0A060WUA1	Uncharacterized protein.	Uncharacterized protein.	0.845
A0A060W3Z5	A0A060WUL7	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A060W3Z5	A0A060WXH5	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A060W3Z5	A0A060WXJ3	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A060W3Z5	A0A060XDZ2	Uncharacterized protein.	WH2 domain-containing protein.	0.947
A0A060W3Z5	A0A060XMK3	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A060W3Z5	A0A060XT15	Uncharacterized protein.	WH2 domain-containing protein.	0.950
A0A060W3Z5	A0A060XX99	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A060W3Z5	A0A060Y3H9	Uncharacterized protein.	Uncharacterized protein.	0.945
A0A060W3Z5	A0A060YAY6	Uncharacterized protein.	WH2 domain-containing protein.	0.950
A0A060W3Z5	A0A060YCT2	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A060W3Z5	A0A060YFG8	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A060W3Z5	A0A060YLC8	Uncharacterized protein.	Uncharacterized protein.	0.947
A0A060W3Z5	A0A060YN84	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A060W3Z5	A0A060YSR4	Uncharacterized protein.	Uncharacterized protein.	0.950
A0A060W3Z5	A0A060YXA7	Uncharacterized protein.	Uncharacterized protein.	0.793
A0A060W3Z5	A0A060Z319	Uncharacterized protein.	Uncharacterized protein.	0.962
A0A060W3Z5	A0A060Z4H0	Uncharacterized protein.	Uncharacterized protein.	0.871
A0A060W3Z5	A0A060Z4J2	Uncharacterized protein.	Uncharacterized protein.	0.974