(6 nodes) TSC1-TSC2 complex network (Oncorhynchus mykiss)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060WRK3	Uncharacterized protein. (1235 aa)
	A0A060WPM5	Uncharacterized protein. (1271 aa)
	A0A060W8B2	Rab-GAP TBC domain-containing protein. (294 aa)
	A0A060WPB0	Uncharacterized protein. (443 aa)
	A0A060WMY9	Uncharacterized protein. (485 aa)
	A0A060WGM4	Uncharacterized protein. (334 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060W8B2	A0A060WGM4	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.994
A0A060W8B2	A0A060WMY9	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.994
A0A060W8B2	A0A060WPB0	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.994
A0A060W8B2	A0A060WPM5	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.995
A0A060W8B2	A0A060WRK3	Rab-GAP TBC domain-containing protein.	Uncharacterized protein.	0.995
A0A060WGM4	A0A060W8B2	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.994
A0A060WGM4	A0A060WMY9	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A060WGM4	A0A060WPM5	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A060WGM4	A0A060WRK3	Uncharacterized protein.	Uncharacterized protein.	0.853
A0A060WMY9	A0A060W8B2	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.994
A0A060WMY9	A0A060WGM4	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A060WMY9	A0A060WPM5	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A060WMY9	A0A060WRK3	Uncharacterized protein.	Uncharacterized protein.	0.850
A0A060WPB0	A0A060W8B2	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.994
A0A060WPB0	A0A060WPM5	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A060WPB0	A0A060WRK3	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A060WPM5	A0A060W8B2	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.995
A0A060WPM5	A0A060WGM4	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A060WPM5	A0A060WMY9	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A060WPM5	A0A060WPB0	Uncharacterized protein.	Uncharacterized protein.	0.846