40 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060YV26	Uncharacterized protein; Belongs to the DEAD box helicase family. (457 aa)
	A0A060YPE9	Helicase ATP-binding domain-containing protein. (130 aa)
	A0A060YNQ1	Uncharacterized protein. (272 aa)
	A0A060YKB6	Helicase ATP-binding domain-containing protein. (222 aa)
	A0A060YG79	Uncharacterized protein; Belongs to the DEAD box helicase family. (758 aa)
	A0A060YDG9	Uncharacterized protein. (173 aa)
	A0A060Y447	Uncharacterized protein; Belongs to the DEAD box helicase family. (486 aa)
	A0A060Y1S5	Uncharacterized protein; Belongs to the DEAD box helicase family. (484 aa)
	A0A060Y118	RNA helicase. (593 aa)
	A0A060Y107	Uncharacterized protein; Belongs to the DEAD box helicase family. (405 aa)
	A0A060XZX9	Uncharacterized protein; Belongs to the DEAD box helicase family. (709 aa)
	A0A060XZD6	Uncharacterized protein; Belongs to the DEAD box helicase family. (745 aa)
	A0A060XVW8	Uncharacterized protein; Belongs to the DEAD box helicase family. (789 aa)
	A0A060XN38	Uncharacterized protein; Belongs to the DEAD box helicase family. (486 aa)
	A0A060XMR2	Uncharacterized protein. (814 aa)
	A0A060XJJ4	Uncharacterized protein; Belongs to the DEAD box helicase family. (680 aa)
	A0A060XI14	Uncharacterized protein. (290 aa)
	A0A060XHZ8	Uncharacterized protein; Belongs to the DEAD box helicase family. (698 aa)
	A0A060XB06	Uncharacterized protein; Belongs to the DEAD box helicase family. (654 aa)
	A0A060X8R9	RNA helicase. (860 aa)
	A0A060X5V1	Uncharacterized protein; Belongs to the DEAD box helicase family. (446 aa)
	A0A060X3T8	Uncharacterized protein. (1188 aa)
	A0A060X3M8	Uncharacterized protein; Belongs to the DEAD box helicase family. (442 aa)
	A0A060WUC6	Uncharacterized protein; Belongs to the DEAD box helicase family. (616 aa)
	A0A060WJJ7	Uncharacterized protein. (194 aa)
	A0A060Z130	Uncharacterized protein; Belongs to the DEAD box helicase family. (490 aa)
	A0A060Z428	Uncharacterized protein; Belongs to the DEAD box helicase family. (313 aa)
	A0A060WER3	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (874 aa)
	A0A060WAR4	Uncharacterized protein; Belongs to the DEAD box helicase family. (629 aa)
	A0A060WA58	Uncharacterized protein; Belongs to the DEAD box helicase family. (414 aa)
	A0A060W9X5	Uncharacterized protein. (242 aa)
	A0A060W9V3	Uncharacterized protein; Belongs to the DEAD box helicase family. (305 aa)
	A0A060W9A4	Uncharacterized protein; Belongs to the DEAD box helicase family. (378 aa)
	A0A060W857	RNA helicase. (663 aa)
	A0A060VZD7	Uncharacterized protein; Belongs to the DEAD box helicase family. (477 aa)
	A0A060VVD3	Uncharacterized protein; Belongs to the DEAD box helicase family. (412 aa)
	A0A060VUK6	Uncharacterized protein; Belongs to the DEAD box helicase family. (456 aa)
	A0A060VRX3	Uncharacterized protein; Belongs to the DEAD box helicase family. (389 aa)
	A0A060VR65	RNA helicase. (716 aa)
	A0A060VNK5	Uncharacterized protein; Belongs to the DEAD box helicase family. (684 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VNK5	A0A060VR65	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA helicase.	0.639
A0A060VNK5	A0A060VRX3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.801
A0A060VNK5	A0A060VZD7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.471
A0A060VNK5	A0A060W857	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA helicase.	0.639
A0A060VNK5	A0A060W9X5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.798
A0A060VNK5	A0A060WER3	Uncharacterized protein; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.584
A0A060VNK5	A0A060X5V1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.604
A0A060VNK5	A0A060X8R9	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA helicase.	0.501
A0A060VNK5	A0A060XB06	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.695
A0A060VNK5	A0A060XHZ8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.693
A0A060VNK5	A0A060XI14	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.499
A0A060VNK5	A0A060XVW8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.785
A0A060VNK5	A0A060XZD6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.693
A0A060VNK5	A0A060XZX9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.693
A0A060VNK5	A0A060Y118	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA helicase.	0.637
A0A060VNK5	A0A060Y1S5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.421
A0A060VNK5	A0A060YKB6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Helicase ATP-binding domain-containing protein.	0.590
A0A060VNK5	A0A060YPE9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Helicase ATP-binding domain-containing protein.	0.414
A0A060VNK5	A0A060YV26	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.689
A0A060VNK5	A0A060Z130	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.422