(37 nodes) RNA recognition motif domain, eukaryote network (Oncorhynchus mykiss)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060X8E6	Uncharacterized protein. (517 aa)
	A0A060VTB6	Uncharacterized protein. (781 aa)
	A0A060W208	Uncharacterized protein. (389 aa)
	A0A060W2N8	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (468 aa)
	A0A060W2X8	RRM domain-containing protein. (167 aa)
	A0A060W678	Uncharacterized protein. (469 aa)
	A0A060WA09	RRM domain-containing protein. (203 aa)
	A0A060WB40	RRM domain-containing protein. (151 aa)
	A0A060WGP2	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (637 aa)
	A0A060WH91	Uncharacterized protein. (558 aa)
	A0A060WUN8	Uncharacterized protein. (651 aa)
	A0A060WY94	RRM domain-containing protein. (376 aa)
	A0A060WZX4	Uncharacterized protein. (194 aa)
	A0A060X0I6	Uncharacterized protein. (239 aa)
	A0A060X105	RRM domain-containing protein. (267 aa)
	A0A060X1G3	Uncharacterized protein. (539 aa)
	A0A060X7S7	Uncharacterized protein. (430 aa)
	A0A060X877	Uncharacterized protein. (428 aa)
	A0A060XCV0	Uncharacterized protein. (523 aa)
	A0A060XD83	RRM domain-containing protein. (155 aa)
	A0A060XG06	Uncharacterized protein. (386 aa)
	A0A060XG69	RRM domain-containing protein. (211 aa)
	A0A060XGV8	Uncharacterized protein. (705 aa)
	A0A060XI29	RRM domain-containing protein. (210 aa)
	A0A060XKV8	Uncharacterized protein. (337 aa)
	A0A060XNY6	RRM domain-containing protein. (383 aa)
	A0A060XUE4	RRM domain-containing protein. (274 aa)
	A0A060XUK7	RRM domain-containing protein. (212 aa)
	A0A060XY17	RRM domain-containing protein. (204 aa)
	A0A060XYL4	RRM domain-containing protein. (179 aa)
	A0A060Y6S9	RRM domain-containing protein. (160 aa)
	A0A060YGF7	Uncharacterized protein. (771 aa)
	A0A060YL86	Uncharacterized protein. (222 aa)
	A0A060YM69	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (468 aa)
	A0A060YV20	Uncharacterized protein. (679 aa)
	A0A060YXG9	Uncharacterized protein. (174 aa)
	CIRBP	Cold-inducible RNA-binding protein. (209 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VTB6	A0A060WGP2	A0A060VTB6	A0A060WGP2	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.598
A0A060VTB6	A0A060WH91	A0A060VTB6	A0A060WH91	Uncharacterized protein.	Uncharacterized protein.	0.598
A0A060VTB6	A0A060WUN8	A0A060VTB6	A0A060WUN8	Uncharacterized protein.	Uncharacterized protein.	0.598
A0A060VTB6	A0A060X8E6	A0A060VTB6	A0A060X8E6	Uncharacterized protein.	Uncharacterized protein.	0.598
A0A060VTB6	A0A060XCV0	A0A060VTB6	A0A060XCV0	Uncharacterized protein.	Uncharacterized protein.	0.598
A0A060W208	A0A060W2N8	A0A060W208	A0A060W2N8	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.703
A0A060W208	A0A060W2X8	A0A060W208	A0A060W2X8	Uncharacterized protein.	RRM domain-containing protein.	0.625
A0A060W208	A0A060WA09	A0A060W208	A0A060WA09	Uncharacterized protein.	RRM domain-containing protein.	0.835
A0A060W208	A0A060WB40	A0A060W208	A0A060WB40	Uncharacterized protein.	RRM domain-containing protein.	0.561
A0A060W208	A0A060WGP2	A0A060W208	A0A060WGP2	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.644
A0A060W208	A0A060WH91	A0A060W208	A0A060WH91	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A060W208	A0A060WUN8	A0A060W208	A0A060WUN8	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A060W208	A0A060WY94	A0A060W208	A0A060WY94	Uncharacterized protein.	RRM domain-containing protein.	0.637
A0A060W208	A0A060WZX4	A0A060W208	A0A060WZX4	Uncharacterized protein.	Uncharacterized protein.	0.696
A0A060W208	A0A060X0I6	A0A060W208	A0A060X0I6	Uncharacterized protein.	Uncharacterized protein.	0.696
A0A060W208	A0A060X105	A0A060W208	A0A060X105	Uncharacterized protein.	RRM domain-containing protein.	0.755
A0A060W208	A0A060X1G3	A0A060W208	A0A060X1G3	Uncharacterized protein.	Uncharacterized protein.	0.561
A0A060W208	A0A060X8E6	A0A060W208	A0A060X8E6	Uncharacterized protein.	Uncharacterized protein.	0.671
A0A060W208	A0A060XCV0	A0A060W208	A0A060XCV0	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A060W208	A0A060XD83	A0A060W208	A0A060XD83	Uncharacterized protein.	RRM domain-containing protein.	0.622