5 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060Y3H9	Uncharacterized protein. (124 aa)
	A0A060YN84	Uncharacterized protein. (91 aa)
	A0A060Z319	Uncharacterized protein. (278 aa)
	A0A060Z9D0	Uncharacterized protein. (444 aa)
	A0A060ZFI6	Uncharacterized protein. (280 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060Y3H9	A0A060YN84	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A060YN84	A0A060Y3H9	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A060YN84	A0A060Z319	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A060YN84	A0A060Z9D0	Uncharacterized protein.	Uncharacterized protein.	0.928
A0A060YN84	A0A060ZFI6	Uncharacterized protein.	Uncharacterized protein.	0.919
A0A060Z319	A0A060YN84	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A060Z319	A0A060Z9D0	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A060Z319	A0A060ZFI6	Uncharacterized protein.	Uncharacterized protein.	0.499
A0A060Z9D0	A0A060YN84	Uncharacterized protein.	Uncharacterized protein.	0.928
A0A060Z9D0	A0A060Z319	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A060ZFI6	A0A060YN84	Uncharacterized protein.	Uncharacterized protein.	0.919
A0A060ZFI6	A0A060Z319	Uncharacterized protein.	Uncharacterized protein.	0.499