37 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060XKU8	Uncharacterized protein. (444 aa)
	LSM1-2	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (139 aa)
	LSM1-3	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	A0A060XYJ3	Uncharacterized protein. (447 aa)
	A0A060XZM9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	PROSC	Pyridoxal phosphate homeostasis protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'- phosphate (PLP), the active form of vitamin B6. (376 aa)
	A0A060Y502	Small nuclear ribonucleoprotein G. (76 aa)
	A0A060Y5H6	Uncharacterized protein. (377 aa)
	A0A060Y7J4	Sm domain-containing protein. (61 aa)
	A0A060YJA3	Sm domain-containing protein. (105 aa)
	A0A060YLT0	Sm domain-containing protein. (138 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	A0A060YR15	Sm domain-containing protein. (68 aa)
	A0A060YT29	Sm domain-containing protein. (121 aa)
	A0A060YT80	Sm domain-containing protein. (338 aa)
	A0A060YY38	Sm domain-containing protein. (94 aa)
	A0A060Z1D0	Sm domain-containing protein. (68 aa)
	LSM4-2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	LSM5-2	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (57 aa)
	SMD3	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	LSM7	U6 snRNA-associated Sm-like protein LSm7. (107 aa)
	SMD2	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	LSM7-2	U6 snRNA-associated Sm-like protein LSm7. (111 aa)
	A0A060VWK5	Sm domain-containing protein. (122 aa)
	A0A060W2M1	Uncharacterized protein. (380 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (110 aa)
	A0A060W7W0	LSM14 domain-containing protein. (166 aa)
	A0A060WCJ5	Sm domain-containing protein. (108 aa)
	A0A060WII1	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	A0A060WJC2	LSM14 domain-containing protein. (166 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	A0A060WL12	Small nuclear ribonucleoprotein Sm D3. (183 aa)
	A0A060X4G3	Small nuclear ribonucleoprotein-associated protein. (229 aa)
	A0A060X588	Sm domain-containing protein. (113 aa)
	A0A060XGB8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	A0A060XGC8	Small nuclear ribonucleoprotein Sm D2. (165 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VWK5	A0A060WCJ5	A0A060VWK5	A0A060WCJ5	Sm domain-containing protein.	Sm domain-containing protein.	0.994
A0A060VWK5	A0A060WII1	A0A060VWK5	A0A060WII1	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.998
A0A060VWK5	A0A060WL12	A0A060VWK5	A0A060WL12	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.998
A0A060VWK5	A0A060X4G3	A0A060VWK5	A0A060X4G3	Sm domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.996
A0A060VWK5	A0A060X588	A0A060VWK5	A0A060X588	Sm domain-containing protein.	Sm domain-containing protein.	0.994
A0A060VWK5	A0A060XGB8	A0A060VWK5	A0A060XGB8	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A060VWK5	A0A060XGC8	A0A060VWK5	A0A060XGC8	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A060VWK5	A0A060XZM9	A0A060VWK5	A0A060XZM9	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.512
A0A060VWK5	A0A060Y502	A0A060VWK5	A0A060Y502	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.999
A0A060VWK5	A0A060Y7J4	A0A060VWK5	A0A060Y7J4	Sm domain-containing protein.	Sm domain-containing protein.	0.998
A0A060VWK5	A0A060YJA3	A0A060VWK5	A0A060YJA3	Sm domain-containing protein.	Sm domain-containing protein.	0.998
A0A060VWK5	A0A060YLT0	A0A060VWK5	A0A060YLT0	Sm domain-containing protein.	Sm domain-containing protein.	0.998
A0A060VWK5	A0A060YR15	A0A060VWK5	A0A060YR15	Sm domain-containing protein.	Sm domain-containing protein.	0.983
A0A060VWK5	A0A060YT29	A0A060VWK5	A0A060YT29	Sm domain-containing protein.	Sm domain-containing protein.	0.998
A0A060VWK5	A0A060YT80	A0A060VWK5	A0A060YT80	Sm domain-containing protein.	Sm domain-containing protein.	0.985
A0A060VWK5	A0A060YY38	A0A060VWK5	A0A060YY38	Sm domain-containing protein.	Sm domain-containing protein.	0.990
A0A060VWK5	A0A060Z1D0	A0A060VWK5	A0A060Z1D0	Sm domain-containing protein.	Sm domain-containing protein.	0.983
A0A060VWK5	LSM1	A0A060VWK5	A0A060W463	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.668
A0A060VWK5	LSM1-2	A0A060VWK5	A0A060XTF9	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.668
A0A060VWK5	LSM1-3	A0A060VWK5	A0A060XYE8	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.668