45 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060X056	Uncharacterized protein. (482 aa)
	A0A060VRX3	Uncharacterized protein; Belongs to the DEAD box helicase family. (389 aa)
	A0A060VUK6	Uncharacterized protein; Belongs to the DEAD box helicase family. (456 aa)
	A0A060VVD3	Uncharacterized protein; Belongs to the DEAD box helicase family. (412 aa)
	A0A060VZD7	Uncharacterized protein; Belongs to the DEAD box helicase family. (477 aa)
	A0A060W407	Uncharacterized protein. (103 aa)
	A0A060W9A4	Uncharacterized protein; Belongs to the DEAD box helicase family. (378 aa)
	A0A060WA58	Uncharacterized protein; Belongs to the DEAD box helicase family. (414 aa)
	A0A060WAR4	Uncharacterized protein; Belongs to the DEAD box helicase family. (629 aa)
	A0A060WER3	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (874 aa)
	A0A060WGT4	Uncharacterized protein. (427 aa)
	A0A060WUC6	Uncharacterized protein; Belongs to the DEAD box helicase family. (616 aa)
	A0A060X3M8	Uncharacterized protein; Belongs to the DEAD box helicase family. (442 aa)
	A0A060X5V1	Uncharacterized protein; Belongs to the DEAD box helicase family. (446 aa)
	A0A060X8R9	RNA helicase. (860 aa)
	A0A060XB06	Uncharacterized protein; Belongs to the DEAD box helicase family. (654 aa)
	A0A060XCF0	Uncharacterized protein. (485 aa)
	A0A060XFV9	Uncharacterized protein. (560 aa)
	A0A060XHZ8	Uncharacterized protein; Belongs to the DEAD box helicase family. (698 aa)
	A0A060XJJ4	Uncharacterized protein; Belongs to the DEAD box helicase family. (680 aa)
	A0A060XMR2	Uncharacterized protein. (814 aa)
	A0A060XN38	Uncharacterized protein; Belongs to the DEAD box helicase family. (486 aa)
	A0A060XT90	Uncharacterized protein. (427 aa)
	A0A060XU40	Uncharacterized protein. (837 aa)
	A0A060XUA8	Uncharacterized protein. (208 aa)
	A0A060XUI5	Uncharacterized protein. (1291 aa)
	A0A060XVW8	Uncharacterized protein; Belongs to the DEAD box helicase family. (789 aa)
	A0A060XZD6	Uncharacterized protein; Belongs to the DEAD box helicase family. (745 aa)
	A0A060XZX9	Uncharacterized protein; Belongs to the DEAD box helicase family. (709 aa)
	A0A060Y107	Uncharacterized protein; Belongs to the DEAD box helicase family. (405 aa)
	A0A060Y1F7	Uncharacterized protein. (609 aa)
	A0A060Y1S5	Uncharacterized protein; Belongs to the DEAD box helicase family. (484 aa)
	A0A060Y447	Uncharacterized protein; Belongs to the DEAD box helicase family. (486 aa)
	A0A060Y6Z1	Uncharacterized protein. (390 aa)
	A0A060YEL4	Uncharacterized protein. (427 aa)
	A0A060YES1	Uncharacterized protein. (506 aa)
	A0A060YG79	Uncharacterized protein; Belongs to the DEAD box helicase family. (758 aa)
	A0A060YGE4	Q_MOTIF domain-containing protein. (208 aa)
	A0A060YJH5	Q_MOTIF domain-containing protein. (135 aa)
	A0A060YNK6	Uncharacterized protein. (134 aa)
	A0A060YNQ1	Uncharacterized protein. (272 aa)
	A0A060YY69	Q_MOTIF domain-containing protein. (201 aa)
	A0A060YZH6	Q_MOTIF domain-containing protein. (186 aa)
	A0A060Z130	Uncharacterized protein; Belongs to the DEAD box helicase family. (490 aa)
	A0A060Z428	Uncharacterized protein; Belongs to the DEAD box helicase family. (313 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VRX3	A0A060VVD3	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.946
A0A060VRX3	A0A060VZD7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.638
A0A060VRX3	A0A060W407	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.947
A0A060VRX3	A0A060WA58	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.947
A0A060VRX3	A0A060WAR4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.811
A0A060VRX3	A0A060WER3	Uncharacterized protein; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.430
A0A060VRX3	A0A060WGT4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.967
A0A060VRX3	A0A060WUC6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.810
A0A060VRX3	A0A060X056	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.627
A0A060VRX3	A0A060X3M8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.823
A0A060VRX3	A0A060X5V1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.497
A0A060VRX3	A0A060X8R9	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA helicase.	0.719
A0A060VRX3	A0A060XB06	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.437
A0A060VRX3	A0A060XCF0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.627
A0A060VRX3	A0A060XFV9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.889
A0A060VRX3	A0A060XHZ8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.438
A0A060VRX3	A0A060XJJ4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.810
A0A060VRX3	A0A060XMR2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.585
A0A060VRX3	A0A060XT90	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.967
A0A060VRX3	A0A060XUA8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.969