STRINGSTRING
A0A060X7X6 A0A060X7X6 A0A060XGC8 A0A060XGC8 A0A060XKU8 A0A060XKU8 LSM1-2 LSM1-2 LSM1-3 LSM1-3 A0A060XYJ3 A0A060XYJ3 A0A060XZM9 A0A060XZM9 PROSC PROSC A0A060Y502 A0A060Y502 A0A060Y5H6 A0A060Y5H6 A0A060Y7J4 A0A060Y7J4 A0A060YJA3 A0A060YJA3 A0A060YLT0 A0A060YLT0 LSM3 LSM3 A0A060YR15 A0A060YR15 A0A060YT29 A0A060YT29 A0A060YT80 A0A060YT80 A0A060YY38 A0A060YY38 A0A060Z1D0 A0A060Z1D0 LSM4-2 LSM4-2 LSM5-2 LSM5-2 A0A060ZAZ6 A0A060ZAZ6 SMD3 SMD3 LSM7 LSM7 SMD2 SMD2 LSM7-2 LSM7-2 A0A060W9V1 A0A060W9V1 A0A060W7W0 A0A060W7W0 LSM4 LSM4 LSM1 LSM1 A0A060W2M1 A0A060W2M1 A0A060VWK5 A0A060VWK5 A0A060WL12 A0A060WL12 LSM5 LSM5 A0A060WJC2 A0A060WJC2 A0A060WII1 A0A060WII1 A0A060X4G3 A0A060X4G3 A0A060X588 A0A060X588 A0A060X5T1 A0A060X5T1 A0A060WDX9 A0A060WDX9 A0A060WCJ5 A0A060WCJ5 A0A060XGB8 A0A060XGB8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A060X7X6AD domain-containing protein. (196 aa)
A0A060XGC8Small nuclear ribonucleoprotein Sm D2. (165 aa)
A0A060XKU8Uncharacterized protein. (444 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (139 aa)
LSM1-3U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
A0A060XYJ3Uncharacterized protein. (447 aa)
A0A060XZM9Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
PROSCPyridoxal phosphate homeostasis protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'- phosphate (PLP), the active form of vitamin B6. (376 aa)
A0A060Y502Small nuclear ribonucleoprotein G. (76 aa)
A0A060Y5H6Uncharacterized protein. (377 aa)
A0A060Y7J4Sm domain-containing protein. (61 aa)
A0A060YJA3Sm domain-containing protein. (105 aa)
A0A060YLT0Sm domain-containing protein. (138 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
A0A060YR15Sm domain-containing protein. (68 aa)
A0A060YT29Sm domain-containing protein. (121 aa)
A0A060YT80Sm domain-containing protein. (338 aa)
A0A060YY38Sm domain-containing protein. (94 aa)
A0A060Z1D0Sm domain-containing protein. (68 aa)
LSM4-2U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
LSM5-2U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (57 aa)
A0A060ZAZ6LSM14 domain-containing protein. (166 aa)
SMD3Small nuclear ribonucleoprotein Sm D3. (128 aa)
LSM7U6 snRNA-associated Sm-like protein LSm7. (107 aa)
SMD2Small nuclear ribonucleoprotein Sm D2. (111 aa)
LSM7-2U6 snRNA-associated Sm-like protein LSm7. (111 aa)
A0A060W9V1AD domain-containing protein. (196 aa)
A0A060W7W0LSM14 domain-containing protein. (166 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (110 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
A0A060W2M1Uncharacterized protein. (380 aa)
A0A060VWK5Sm domain-containing protein. (122 aa)
A0A060WL12Small nuclear ribonucleoprotein Sm D3. (183 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
A0A060WJC2LSM14 domain-containing protein. (166 aa)
A0A060WII1Small nuclear ribonucleoprotein Sm D3. (127 aa)
A0A060X4G3Small nuclear ribonucleoprotein-associated protein. (229 aa)
A0A060X588Sm domain-containing protein. (113 aa)
A0A060X5T1LsmAD domain-containing protein. (1058 aa)
A0A060WDX9AD domain-containing protein. (196 aa)
A0A060WCJ5Sm domain-containing protein. (108 aa)
A0A060XGB8Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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