73 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060WQH5	Uncharacterized protein; Belongs to the AAA ATPase family. (527 aa)
	A0A060WNI4	FYVE-type domain-containing protein. (430 aa)
	A0A060WN49	VHS domain-containing protein. (150 aa)
	A0A060WN20	VPS37 C-terminal domain-containing protein. (251 aa)
	A0A060WJ95	Vta1 domain-containing protein. (105 aa)
	A0A060WHB7	Uncharacterized protein. (207 aa)
	A0A060WGT8	Uncharacterized protein. (790 aa)
	A0A060WEX7	Uncharacterized protein; Belongs to the AAA ATPase family. (487 aa)
	A0A060WDS2	Uncharacterized protein. (322 aa)
	A0A060WBF9	VPS37 C-terminal domain-containing protein. (245 aa)
	A0A060W9Q8	Uncharacterized protein. (223 aa)
	A0A060W7U9	Uncharacterized protein; Belongs to the AAA ATPase family. (436 aa)
	A0A060W478	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (258 aa)
	A0A060W3H5	Uncharacterized protein. (220 aa)
	A0A060W2D9	UBA domain-containing protein. (155 aa)
	A0A060W113	Uncharacterized protein. (220 aa)
	A0A060W0Y2	VPS37 C-terminal domain-containing protein. (270 aa)
	A0A060VYT7	Uncharacterized protein. (220 aa)
	A0A060VUN2	Uncharacterized protein. (239 aa)
	A0A060VTT0	Uncharacterized protein. (508 aa)
	A0A060VTG3	Uncharacterized protein; Belongs to the AAA ATPase family. (438 aa)
	A0A060VSC2	VPS37 C-terminal domain-containing protein. (91 aa)
	A0A060VNI9	Uncharacterized protein. (239 aa)
	A0A060VMY6	Uncharacterized protein. (219 aa)
	A0A060VMD7	Uncharacterized protein. (223 aa)
	A0A060W5Z6	KxDL domain-containing protein. (185 aa)
	Q9PT09_ONCMY	Ubiquitin. (128 aa)
	UBIQ	Ubiquitin. (128 aa)
	A0A061AF14	Uncharacterized protein. (96 aa)
	A0A060ZI59	Uncharacterized protein. (138 aa)
	A0A060ZA85	Uncharacterized protein. (121 aa)
	A0A060Z9S5	Uncharacterized protein. (91 aa)
	A0A060Z7V2	Uncharacterized protein. (107 aa)
	A0A060Z5C0	VHS domain-containing protein. (79 aa)
	A0A060Z4Q4	Uncharacterized protein; Belongs to the AAA ATPase family. (184 aa)
	A0A060Z3F5	Uncharacterized protein. (189 aa)
	A0A060Z2I5	Uncharacterized protein. (155 aa)
	A0A060Z1M0	Uncharacterized protein. (157 aa)
	A0A060Z0Y6	Uncharacterized protein. (121 aa)
	A0A060YZF8	Uncharacterized protein. (290 aa)
	A0A060YWU4	Uncharacterized protein. (56 aa)
	A0A060YWK4	Uncharacterized protein. (220 aa)
	A0A060YRB9	MABP domain-containing protein. (316 aa)
	A0A060YM34	Uncharacterized protein. (174 aa)
	A0A060YM07	Uncharacterized protein. (345 aa)
	A0A060YIW9	GLUE N-terminal domain-containing protein. (165 aa)
	A0A060YIS2	Uncharacterized protein. (220 aa)
	A0A060YFT4	Ubiquitin-like domain-containing protein. (156 aa)
	A0A060YEV8	B box-type domain-containing protein. (334 aa)
	A0A060YA98	VHS domain-containing protein. (424 aa)
	A0A060Y9W9	MIT domain-containing protein. (178 aa)
	A0A060Y7H4	VPS37 C-terminal domain-containing protein. (285 aa)
	A0A060Y6A1	VPS37 C-terminal domain-containing protein. (153 aa)
	A0A060Y691	VPS37 C-terminal domain-containing protein. (245 aa)
	A0A060XZ28	Uncharacterized protein. (161 aa)
	A0A060XYD9	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (223 aa)
	A0A060XXM7	KxDL domain-containing protein. (187 aa)
	A0A060XXB6	Uncharacterized protein. (209 aa)
	A0A060XSM6	Uncharacterized protein. (253 aa)
	A0A060XJ86	Uncharacterized protein. (678 aa)
	A0A060XFL0	Uncharacterized protein. (505 aa)
	A0A060XF82	Vps4_C domain-containing protein. (69 aa)
	A0A060XCL2	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (223 aa)
	A0A060X9R1	Uncharacterized protein. (390 aa)
	A0A060X3F6	Uncharacterized protein; Belongs to the AAA ATPase family. (438 aa)
	A0A060WZ23	Ubiquitin-like domain-containing protein. (156 aa)
	A0A060WUP2	Uncharacterized protein. (443 aa)
	A0A060WTR7	SH3 domain-containing protein. (374 aa)
	A0A060WTQ9	Uncharacterized protein. (707 aa)
	A0A060WT94	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (595 aa)
	A0A060WSB5	Uncharacterized protein. (241 aa)
	A0A060WR05	Uncharacterized protein. (222 aa)
	A0A060WQW2	Uncharacterized protein. (260 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VMD7	A0A060VMY6	A0A060VMD7	A0A060VMY6	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A060VMD7	A0A060VNI9	A0A060VMD7	A0A060VNI9	Uncharacterized protein.	Uncharacterized protein.	0.763
A0A060VMD7	A0A060VSC2	A0A060VMD7	A0A060VSC2	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.662
A0A060VMD7	A0A060VTG3	A0A060VMD7	A0A060VTG3	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.921
A0A060VMD7	A0A060VTT0	A0A060VMD7	A0A060VTT0	Uncharacterized protein.	Uncharacterized protein.	0.975
A0A060VMD7	A0A060VUN2	A0A060VMD7	A0A060VUN2	Uncharacterized protein.	Uncharacterized protein.	0.833
A0A060VMD7	A0A060VYT7	A0A060VMD7	A0A060VYT7	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A060VMD7	A0A060W0Y2	A0A060VMD7	A0A060W0Y2	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.662
A0A060VMD7	A0A060W3H5	A0A060VMD7	A0A060W3H5	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A060VMD7	A0A060W478	A0A060VMD7	A0A060W478	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.954
A0A060VMD7	A0A060W7U9	A0A060VMD7	A0A060W7U9	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.921
A0A060VMD7	A0A060WBF9	A0A060VMD7	A0A060WBF9	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.741
A0A060VMD7	A0A060WDS2	A0A060VMD7	A0A060WDS2	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A060VMD7	A0A060WEX7	A0A060VMD7	A0A060WEX7	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.921
A0A060VMD7	A0A060WGT8	A0A060VMD7	A0A060WGT8	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A060VMD7	A0A060WHB7	A0A060VMD7	A0A060WHB7	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A060VMD7	A0A060WJ95	A0A060VMD7	A0A060WJ95	Uncharacterized protein.	Vta1 domain-containing protein.	0.904
A0A060VMD7	A0A060WN20	A0A060VMD7	A0A060WN20	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.672
A0A060VMD7	A0A060WNI4	A0A060VMD7	A0A060WNI4	Uncharacterized protein.	FYVE-type domain-containing protein.	0.479
A0A060VMD7	A0A060WQH5	A0A060VMD7	A0A060WQH5	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.921