(22 nodes) Ribosomal protein S1-like RNA-binding domain network (Oncorhynchus mykiss)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060VUY9	S1 motif domain-containing protein. (295 aa)
	A0A060VZG6	S1 motif domain-containing protein. (315 aa)
	A0A060W418	Uncharacterized protein. (1222 aa)
	A0A060W7P4	Uncharacterized protein. (295 aa)
	A0A060WTG2	S1 motif domain-containing protein. (770 aa)
	A0A060WTM5	Uncharacterized protein. (672 aa)
	A0A060XEB2	Uncharacterized protein. (1321 aa)
	A0A060XM80	S1 motif domain-containing protein. (803 aa)
	A0A060XPF2	S1 motif domain-containing protein. (322 aa)
	A0A060XTN7	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1751 aa)
	A0A060XTU5	Uncharacterized protein. (1190 aa)
	A0A060XUE7	Uncharacterized protein. (1208 aa)
	A0A060XWF9	S1 motif domain-containing protein. (662 aa)
	A0A060XXE1	Uncharacterized protein. (599 aa)
	A0A060Y1B7	Uncharacterized protein. (1808 aa)
	A0A060Y8Z2	Uncharacterized protein. (160 aa)
	A0A060YEP8	Uncharacterized protein. (192 aa)
	A0A060YIG8	Uncharacterized protein. (838 aa)
	A0A060YMR8	Uncharacterized protein. (192 aa)
	A0A060YUX5	S1 domain-containing protein. (183 aa)
	RPB7	DNA-directed RNA polymerase II 19 kDa polypeptide. (172 aa)
	Q98TT1_ONCMY	Eukaryotic initiation factor 2 alpha subunit. (315 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VUY9	A0A060W418	A0A060VUY9	A0A060W418	S1 motif domain-containing protein.	Uncharacterized protein.	0.660
A0A060VUY9	A0A060W7P4	A0A060VUY9	A0A060W7P4	S1 motif domain-containing protein.	Uncharacterized protein.	0.543
A0A060VUY9	A0A060WTG2	A0A060VUY9	A0A060WTG2	S1 motif domain-containing protein.	S1 motif domain-containing protein.	0.436
A0A060VUY9	A0A060XEB2	A0A060VUY9	A0A060XEB2	S1 motif domain-containing protein.	Uncharacterized protein.	0.936
A0A060VUY9	A0A060XM80	A0A060VUY9	A0A060XM80	S1 motif domain-containing protein.	S1 motif domain-containing protein.	0.436
A0A060VUY9	A0A060XTU5	A0A060VUY9	A0A060XTU5	S1 motif domain-containing protein.	Uncharacterized protein.	0.660
A0A060VUY9	A0A060XUE7	A0A060VUY9	A0A060XUE7	S1 motif domain-containing protein.	Uncharacterized protein.	0.660
A0A060VUY9	A0A060Y1B7	A0A060VUY9	A0A060Y1B7	S1 motif domain-containing protein.	Uncharacterized protein.	0.936
A0A060VUY9	A0A060Y8Z2	A0A060VUY9	A0A060Y8Z2	S1 motif domain-containing protein.	Uncharacterized protein.	0.657
A0A060VZG6	A0A060XPF2	A0A060VZG6	A0A060XPF2	S1 motif domain-containing protein.	S1 motif domain-containing protein.	0.910
A0A060VZG6	Q98TT1_ONCMY	A0A060VZG6	Q98TT1	S1 motif domain-containing protein.	Eukaryotic initiation factor 2 alpha subunit.	0.863
A0A060W418	A0A060VUY9	A0A060W418	A0A060VUY9	Uncharacterized protein.	S1 motif domain-containing protein.	0.660
A0A060W418	A0A060W7P4	A0A060W418	A0A060W7P4	Uncharacterized protein.	Uncharacterized protein.	0.660
A0A060W418	A0A060XEB2	A0A060W418	A0A060XEB2	Uncharacterized protein.	Uncharacterized protein.	0.838
A0A060W418	A0A060Y1B7	A0A060W418	A0A060Y1B7	Uncharacterized protein.	Uncharacterized protein.	0.838
A0A060W7P4	A0A060VUY9	A0A060W7P4	A0A060VUY9	Uncharacterized protein.	S1 motif domain-containing protein.	0.543
A0A060W7P4	A0A060W418	A0A060W7P4	A0A060W418	Uncharacterized protein.	Uncharacterized protein.	0.660
A0A060W7P4	A0A060WTG2	A0A060W7P4	A0A060WTG2	Uncharacterized protein.	S1 motif domain-containing protein.	0.436
A0A060W7P4	A0A060XEB2	A0A060W7P4	A0A060XEB2	Uncharacterized protein.	Uncharacterized protein.	0.936
A0A060W7P4	A0A060XM80	A0A060W7P4	A0A060XM80	Uncharacterized protein.	S1 motif domain-containing protein.	0.436