(13 nodes) Zinc finger binding to DNA consensus sequence [AT]GATA[AG] network (Oncorhynchus mykiss)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060Y3B6	GATA-type domain-containing protein. (304 aa)
	A0A060XXZ3	Uncharacterized protein. (398 aa)
	A0A060XQF7	Uncharacterized protein. (456 aa)
	A0A060XMC8	Uncharacterized protein. (563 aa)
	A0A060XLE8	Uncharacterized protein. (424 aa)
	A0A060WAB0	Uncharacterized protein. (425 aa)
	A0A060W8I7	Uncharacterized protein. (373 aa)
	A0A060VVC4	Uncharacterized protein. (497 aa)
	A0A060YFP7	Uncharacterized protein. (460 aa)
	A0A060YKG1	GATA-type domain-containing protein. (324 aa)
	A0A060YUV9	Uncharacterized protein. (568 aa)
	A0A060YY08	GATA-type domain-containing protein. (394 aa)
	A0A060Z440	Uncharacterized protein. (195 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VVC4	A0A060W8I7	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A060VVC4	A0A060XQF7	Uncharacterized protein.	Uncharacterized protein.	0.643
A0A060VVC4	A0A060YFP7	Uncharacterized protein.	Uncharacterized protein.	0.637
A0A060VVC4	A0A060YKG1	Uncharacterized protein.	GATA-type domain-containing protein.	0.620
A0A060W8I7	A0A060VVC4	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A060W8I7	A0A060WAB0	Uncharacterized protein.	Uncharacterized protein.	0.688
A0A060W8I7	A0A060XLE8	Uncharacterized protein.	Uncharacterized protein.	0.689
A0A060W8I7	A0A060XXZ3	Uncharacterized protein.	Uncharacterized protein.	0.647
A0A060W8I7	A0A060YY08	Uncharacterized protein.	GATA-type domain-containing protein.	0.620
A0A060W8I7	A0A060Z440	Uncharacterized protein.	Uncharacterized protein.	0.630
A0A060WAB0	A0A060W8I7	Uncharacterized protein.	Uncharacterized protein.	0.688
A0A060WAB0	A0A060XQF7	Uncharacterized protein.	Uncharacterized protein.	0.684
A0A060WAB0	A0A060YFP7	Uncharacterized protein.	Uncharacterized protein.	0.678
A0A060WAB0	A0A060YKG1	Uncharacterized protein.	GATA-type domain-containing protein.	0.663
A0A060XLE8	A0A060W8I7	Uncharacterized protein.	Uncharacterized protein.	0.689
A0A060XLE8	A0A060XQF7	Uncharacterized protein.	Uncharacterized protein.	0.684
A0A060XLE8	A0A060YFP7	Uncharacterized protein.	Uncharacterized protein.	0.678
A0A060XLE8	A0A060YKG1	Uncharacterized protein.	GATA-type domain-containing protein.	0.663
A0A060XQF7	A0A060VVC4	Uncharacterized protein.	Uncharacterized protein.	0.643
A0A060XQF7	A0A060WAB0	Uncharacterized protein.	Uncharacterized protein.	0.684