9 items (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A060ZAZ6	LSM14 domain-containing protein. (166 aa)
	A0A060Y5H6	Uncharacterized protein. (377 aa)
	A0A060XYJ3	Uncharacterized protein. (447 aa)
	A0A060XKU8	Uncharacterized protein. (444 aa)
	A0A060XCS3	DFDF domain-containing protein. (312 aa)
	A0A060XAB7	Uncharacterized protein. (475 aa)
	A0A060WJC2	LSM14 domain-containing protein. (166 aa)
	A0A060W7W0	LSM14 domain-containing protein. (166 aa)
	A0A060W2M1	Uncharacterized protein. (380 aa)

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060W2M1	A0A060W7W0	Uncharacterized protein.	LSM14 domain-containing protein.	0.426
A0A060W2M1	A0A060WJC2	Uncharacterized protein.	LSM14 domain-containing protein.	0.425
A0A060W2M1	A0A060XAB7	Uncharacterized protein.	Uncharacterized protein.	0.813
A0A060W2M1	A0A060XCS3	Uncharacterized protein.	DFDF domain-containing protein.	0.813
A0A060W2M1	A0A060XKU8	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A060W2M1	A0A060XYJ3	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A060W2M1	A0A060ZAZ6	Uncharacterized protein.	LSM14 domain-containing protein.	0.813
A0A060W7W0	A0A060W2M1	LSM14 domain-containing protein.	Uncharacterized protein.	0.426
A0A060W7W0	A0A060XAB7	LSM14 domain-containing protein.	Uncharacterized protein.	0.797
A0A060W7W0	A0A060XCS3	LSM14 domain-containing protein.	DFDF domain-containing protein.	0.797
A0A060W7W0	A0A060Y5H6	LSM14 domain-containing protein.	Uncharacterized protein.	0.430
A0A060W7W0	A0A060ZAZ6	LSM14 domain-containing protein.	LSM14 domain-containing protein.	0.797
A0A060WJC2	A0A060W2M1	LSM14 domain-containing protein.	Uncharacterized protein.	0.425
A0A060WJC2	A0A060XAB7	LSM14 domain-containing protein.	Uncharacterized protein.	0.797
A0A060WJC2	A0A060XCS3	LSM14 domain-containing protein.	DFDF domain-containing protein.	0.797
A0A060WJC2	A0A060Y5H6	LSM14 domain-containing protein.	Uncharacterized protein.	0.428
A0A060WJC2	A0A060ZAZ6	LSM14 domain-containing protein.	LSM14 domain-containing protein.	0.797
A0A060XAB7	A0A060W2M1	Uncharacterized protein.	Uncharacterized protein.	0.813
A0A060XAB7	A0A060W7W0	Uncharacterized protein.	LSM14 domain-containing protein.	0.797
A0A060XAB7	A0A060WJC2	Uncharacterized protein.	LSM14 domain-containing protein.	0.797