5 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106572283	methyl-CpG-binding domain protein 3-like isoform X1. (447 aa)
	LOC106561082	Uncharacterized protein LOC106561082. (530 aa)
	RBBP7	Histone-binding protein RBBP7 isoform X2. (445 aa)
	LOC106582976	chromodomain-helicase-DNA-binding protein 5-like isoform X4. (2029 aa)
	LOC106589409	Metastasis-associated protein MTA3-like isoform X1. (707 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106561082	LOC106572283	ENSSSAP00000060378	ENSSSAP00000044642	Uncharacterized protein LOC106561082.	methyl-CpG-binding domain protein 3-like isoform X1.	0.685
LOC106561082	LOC106582976	ENSSSAP00000060378	ENSSSAP00000087869	Uncharacterized protein LOC106561082.	chromodomain-helicase-DNA-binding protein 5-like isoform X4.	0.682
LOC106561082	LOC106589409	ENSSSAP00000060378	ENSSSAP00000104111	Uncharacterized protein LOC106561082.	Metastasis-associated protein MTA3-like isoform X1.	0.679
LOC106561082	RBBP7	ENSSSAP00000060378	ENSSSAP00000061374	Uncharacterized protein LOC106561082.	Histone-binding protein RBBP7 isoform X2.	0.884
LOC106572283	LOC106561082	ENSSSAP00000044642	ENSSSAP00000060378	methyl-CpG-binding domain protein 3-like isoform X1.	Uncharacterized protein LOC106561082.	0.685
LOC106572283	LOC106582976	ENSSSAP00000044642	ENSSSAP00000087869	methyl-CpG-binding domain protein 3-like isoform X1.	chromodomain-helicase-DNA-binding protein 5-like isoform X4.	0.801
LOC106572283	LOC106589409	ENSSSAP00000044642	ENSSSAP00000104111	methyl-CpG-binding domain protein 3-like isoform X1.	Metastasis-associated protein MTA3-like isoform X1.	0.903
LOC106572283	RBBP7	ENSSSAP00000044642	ENSSSAP00000061374	methyl-CpG-binding domain protein 3-like isoform X1.	Histone-binding protein RBBP7 isoform X2.	0.836
LOC106582976	LOC106561082	ENSSSAP00000087869	ENSSSAP00000060378	chromodomain-helicase-DNA-binding protein 5-like isoform X4.	Uncharacterized protein LOC106561082.	0.682
LOC106582976	LOC106572283	ENSSSAP00000087869	ENSSSAP00000044642	chromodomain-helicase-DNA-binding protein 5-like isoform X4.	methyl-CpG-binding domain protein 3-like isoform X1.	0.801
LOC106582976	LOC106589409	ENSSSAP00000087869	ENSSSAP00000104111	chromodomain-helicase-DNA-binding protein 5-like isoform X4.	Metastasis-associated protein MTA3-like isoform X1.	0.775
LOC106582976	RBBP7	ENSSSAP00000087869	ENSSSAP00000061374	chromodomain-helicase-DNA-binding protein 5-like isoform X4.	Histone-binding protein RBBP7 isoform X2.	0.766
LOC106589409	LOC106561082	ENSSSAP00000104111	ENSSSAP00000060378	Metastasis-associated protein MTA3-like isoform X1.	Uncharacterized protein LOC106561082.	0.679
LOC106589409	LOC106572283	ENSSSAP00000104111	ENSSSAP00000044642	Metastasis-associated protein MTA3-like isoform X1.	methyl-CpG-binding domain protein 3-like isoform X1.	0.903
LOC106589409	LOC106582976	ENSSSAP00000104111	ENSSSAP00000087869	Metastasis-associated protein MTA3-like isoform X1.	chromodomain-helicase-DNA-binding protein 5-like isoform X4.	0.775
LOC106589409	RBBP7	ENSSSAP00000104111	ENSSSAP00000061374	Metastasis-associated protein MTA3-like isoform X1.	Histone-binding protein RBBP7 isoform X2.	0.858
RBBP7	LOC106561082	ENSSSAP00000061374	ENSSSAP00000060378	Histone-binding protein RBBP7 isoform X2.	Uncharacterized protein LOC106561082.	0.884
RBBP7	LOC106572283	ENSSSAP00000061374	ENSSSAP00000044642	Histone-binding protein RBBP7 isoform X2.	methyl-CpG-binding domain protein 3-like isoform X1.	0.836
RBBP7	LOC106582976	ENSSSAP00000061374	ENSSSAP00000087869	Histone-binding protein RBBP7 isoform X2.	chromodomain-helicase-DNA-binding protein 5-like isoform X4.	0.766
RBBP7	LOC106589409	ENSSSAP00000061374	ENSSSAP00000104111	Histone-binding protein RBBP7 isoform X2.	Metastasis-associated protein MTA3-like isoform X1.	0.858