STRINGSTRING
rtf1 rtf1 LOC106589640 LOC106589640 ENSSSAP00000000977 ENSSSAP00000000977 ENSSSAP00000001365 ENSSSAP00000001365 ENSSSAP00000002328 ENSSSAP00000002328 LOC106601646 LOC106601646 ENSSSAP00000003551 ENSSSAP00000003551 ENSSSAP00000007202 ENSSSAP00000007202 LOC106608676 LOC106608676 LOC106579579 LOC106579579 ENSSSAP00000007773 ENSSSAP00000007773 ENSSSAP00000008487 ENSSSAP00000008487 TAF5 TAF5 ENSSSAP00000012632 ENSSSAP00000012632 LOC106567679 LOC106567679 tbp tbp polr2c polr2c LOC106572212 LOC106572212 fbxw12 fbxw12 Ercc3 Ercc3 ENSSSAP00000015427 ENSSSAP00000015427 ENSSSAP00000015966 ENSSSAP00000015966 LOC106567670 LOC106567670 LOC106570222 LOC106570222 taf13 taf13 LOC106589640-2 LOC106589640-2 ENSSSAP00000020769 ENSSSAP00000020769 LOC106591826 LOC106591826 ENSSSAP00000021239 ENSSSAP00000021239 gtf2h5 gtf2h5 LOC106587995 LOC106587995 ENSSSAP00000022504 ENSSSAP00000022504 srbd1 srbd1 t2ag t2ag ENSSSAP00000023835 ENSSSAP00000023835 ENSSSAP00000024470 ENSSSAP00000024470 t2fb t2fb ENSSSAP00000026272 ENSSSAP00000026272 ccnh ccnh ENSSSAP00000027661 ENSSSAP00000027661 LOC106588593 LOC106588593 LOC106572977 LOC106572977 ENSSSAP00000030087 ENSSSAP00000030087 LOC106592956 LOC106592956 ENSSSAP00000031507 ENSSSAP00000031507 LOC106602273 LOC106602273 LOC106567893 LOC106567893 TAF4 TAF4 LOC106565640 LOC106565640 LOC106560681 LOC106560681 LOC100196672 LOC100196672 LOC106589640-3 LOC106589640-3 ENSSSAP00000034961 ENSSSAP00000034961 taf8 taf8 ENSSSAP00000035399 ENSSSAP00000035399 mnat1 mnat1 gtf2h1 gtf2h1 LOC106608227 LOC106608227 ENSSSAP00000039728 ENSSSAP00000039728 ENSSSAP00000039787 ENSSSAP00000039787 SUPT6H SUPT6H gtf2h4 gtf2h4 POLR2B POLR2B ENSSSAP00000042152 ENSSSAP00000042152 gtf2f1 gtf2f1 ENSSSAP00000043992 ENSSSAP00000043992 taf4 taf4 cdk20 cdk20 LOC106580818 LOC106580818 ENSSSAP00000045384 ENSSSAP00000045384 LOC106602816 LOC106602816 cdc73 cdc73 ENSSSAP00000049050 ENSSSAP00000049050 LOC106612364 LOC106612364 ENSSSAP00000049385 ENSSSAP00000049385 ENSSSAP00000049388 ENSSSAP00000049388 LOC106572622 LOC106572622 ENSSSAP00000053097 ENSSSAP00000053097 LOC106603584 LOC106603584 LOC106580633 LOC106580633 tbpl1 tbpl1 LOC106586522 LOC106586522 ENSSSAP00000056066 ENSSSAP00000056066 ENSSSAP00000056107 ENSSSAP00000056107 ENSSSAP00000057692 ENSSSAP00000057692 LOC106602907 LOC106602907 LOC106586527 LOC106586527 SSRP1 SSRP1 LOC106562324 LOC106562324 LOC106604162 LOC106604162 ENSSSAP00000064139 ENSSSAP00000064139 LOC106561532 LOC106561532 ENSSSAP00000064944 ENSSSAP00000064944 LOC106612273 LOC106612273 ENSSSAP00000065606 ENSSSAP00000065606 ENSSSAP00000065847 ENSSSAP00000065847 ENSSSAP00000066057 ENSSSAP00000066057 LOC106594708 LOC106594708 TCEA1 TCEA1 cinp cinp LOC106573262 LOC106573262 LOC106577941 LOC106577941 ENSSSAP00000069592 ENSSSAP00000069592 ENSSSAP00000070509 ENSSSAP00000070509 LOC106611474 LOC106611474 supt4h1 supt4h1 uvssa uvssa LOC106604983 LOC106604983 LOC106605011 LOC106605011 taf7 taf7 LOC106581163 LOC106581163 ENSSSAP00000074105 ENSSSAP00000074105 ENSSSAP00000074515 ENSSSAP00000074515 ENSSSAP00000077142 ENSSSAP00000077142 LOC106567856 LOC106567856 polr2i-2 polr2i-2 ENSSSAP00000078596 ENSSSAP00000078596 cdc73-2 cdc73-2 LOC106566458 LOC106566458 paf1 paf1 LOC106571676 LOC106571676 LOC106562103 LOC106562103 taf12 taf12 LOC106607142 LOC106607142 LOC106568989 LOC106568989 LOC106584402 LOC106584402 LOC106588677 LOC106588677 ENSSSAP00000089306 ENSSSAP00000089306 ENSSSAP00000089324 ENSSSAP00000089324 LOC106563783 LOC106563783 LOC106573064 LOC106573064 LOC106580766 LOC106580766 ercc8 ercc8 LOC106608973 LOC106608973 rpb2 rpb2 ENSSSAP00000094070 ENSSSAP00000094070 LOC106589653 LOC106589653 ENSSSAP00000094271 ENSSSAP00000094271 ENSSSAP00000094959 ENSSSAP00000094959 gtf2e1 gtf2e1 ctr9 ctr9 SUPT6H-2 SUPT6H-2 EEPD1 EEPD1 LOC106562390 LOC106562390 ENSSSAP00000097323 ENSSSAP00000097323 LOC106567465 LOC106567465 ENSSSAP00000098749 ENSSSAP00000098749 tf2b tf2b LOC100286423 LOC100286423 LOC106587565 LOC106587565 LOC106602577 LOC106602577 gtf2h3 gtf2h3 LOC106612892 LOC106612892 ENSSSAP00000104469 ENSSSAP00000104469 ENSSSAP00000109872 ENSSSAP00000109872 spag16 spag16 ENSSSAP00000110568 ENSSSAP00000110568 WDSUB1 WDSUB1 ENSSSAP00000113560 ENSSSAP00000113560 taf1 taf1 LOC106560344 LOC106560344 taf11 taf11 LOC106588642 LOC106588642 rngtt rngtt ercc6 ercc6 LOC106561664 LOC106561664 CROCC CROCC LOC106577550 LOC106577550 LOC106565801 LOC106565801 rpb4 rpb4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rtf1RNA polymerase-associated protein RTF1 homolog isoform X1. (694 aa)
LOC106589640Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (83 aa)
ENSSSAP00000000977annotation not available (500 aa)
ENSSSAP00000001365annotation not available (2896 aa)
ENSSSAP00000002328annotation not available (136 aa)
LOC106601646Uncharacterized protein C17orf53 homolog isoform X1. (502 aa)
ENSSSAP00000003551annotation not available (301 aa)
ENSSSAP00000007202annotation not available (185 aa)
LOC106608676DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1865 aa)
LOC106579579TFIIA-alpha and beta-like factor isoform X3. (67 aa)
ENSSSAP00000007773annotation not available (556 aa)
ENSSSAP00000008487annotation not available (81 aa)
TAF5Transcription initiation factor TFIID subunit 5-like. (757 aa)
ENSSSAP00000012632annotation not available (116 aa)
LOC106567679Uroplakin-3b-like protein. (367 aa)
tbpTATA-box-binding protein isoform X1. (299 aa)
polr2cDNA-directed RNA polymerase II subunit RPB3. (275 aa)
LOC106572212Transcription initiation factor TFIID subunit 10-like isoform X1. (230 aa)
fbxw12F-box/WD repeat-containing protein 12. (479 aa)
Ercc3ERCC excision repair 3, TFIIH core complex helicase subunit. (100 aa)
ENSSSAP00000015427General transcription factor IIF, polypeptide 2a. (275 aa)
ENSSSAP00000015966annotation not available (921 aa)
LOC106567670DNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
LOC106570222RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1. (1043 aa)
taf13Transcription initiation factor TFIID subunit 13. (124 aa)
LOC106589640-2Transcription elongation factor 1 homolog. (84 aa)
ENSSSAP00000020769annotation not available (483 aa)
LOC106591826FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (409 aa)
ENSSSAP00000021239annotation not available (181 aa)
gtf2h5General transcription factor IIH subunit 5. (71 aa)
LOC106587995Transcription initiation factor IIA subunit 2. (180 aa)
ENSSSAP00000022504annotation not available (181 aa)
srbd1S1 RNA-binding domain-containing protein 1 isoform X1. (1020 aa)
t2agTranscription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
ENSSSAP00000023835annotation not available (81 aa)
ENSSSAP00000024470annotation not available (137 aa)
t2fbGeneral transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (275 aa)
ENSSSAP00000026272annotation not available (63 aa)
ccnhcyclin-H isoform X1; Belongs to the cyclin family. (324 aa)
ENSSSAP00000027661annotation not available (67 aa)
LOC106588593RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1. (1037 aa)
LOC106572977Transcription initiation factor TFIID subunit 2. (485 aa)
ENSSSAP00000030087annotation not available (265 aa)
LOC106592956Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (263 aa)
ENSSSAP00000031507annotation not available (140 aa)
LOC106602273TATA box-binding protein-like protein 2. (296 aa)
LOC106567893Transcription initiation factor TFIID subunit 9-like isoform X1. (254 aa)
TAF4Transcription initiation factor TFIID subunit 4-like isoform X2. (922 aa)
LOC106565640Rootletin-like isoform X2. (2045 aa)
LOC106560681Transcription initiation factor TFIID subunit 6-like. (689 aa)
LOC100196672General transcription factor IIH subunit. (393 aa)
LOC106589640-3Transcription elongation factor 1 homolog. (83 aa)
ENSSSAP00000034961Polymerase (RNA) II (DNA directed) polypeptide C. (274 aa)
taf8Transcription initiation factor TFIID subunit 8. (308 aa)
ENSSSAP00000035399annotation not available (401 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (314 aa)
gtf2h1General transcription factor IIH subunit 1. (588 aa)
LOC106608227Transcription initiation factor IIA subunit 1-like isoform X1. (413 aa)
ENSSSAP00000039728annotation not available (281 aa)
ENSSSAP00000039787annotation not available (184 aa)
SUPT6HSPT6 homolog, histone chaperone and transcription elongation factor. (1596 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (462 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ENSSSAP00000042152annotation not available (362 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (493 aa)
ENSSSAP00000043992annotation not available (284 aa)
taf4Transcription initiation factor TFIID subunit 4. (1048 aa)
cdk20Cyclin-dependent kinase 20; Belongs to the protein kinase superfamily. (335 aa)
LOC106580818SID1 transmembrane family member 2-like isoform X4. (866 aa)
ENSSSAP00000045384Polymerase (RNA) II (DNA directed) polypeptide I. (89 aa)
LOC106602816Transcription initiation factor TFIID subunit 6-like. (644 aa)
cdc73Parafibromin. (530 aa)
ENSSSAP00000049050annotation not available (319 aa)
LOC106612364Protein IWS1 homolog isoform X1. (723 aa)
ENSSSAP00000049385annotation not available (476 aa)
ENSSSAP00000049388annotation not available (114 aa)
LOC106572622Transcription initiation factor TFIID subunit 8-like isoform X1. (308 aa)
ENSSSAP00000053097annotation not available (407 aa)
LOC106603584Transcription initiation factor TFIID subunit 9-like. (296 aa)
LOC106580633Protein IWS1 homolog isoform X4. (804 aa)
tbpl1TATA box-binding protein-like protein 1. (187 aa)
LOC106586522General transcription factor IIF subunit 2-like. (131 aa)
ENSSSAP00000056066annotation not available (118 aa)
ENSSSAP00000056107General transcription factor IIF, polypeptide 2b. (213 aa)
ENSSSAP00000057692SPT5 homolog, DSIF elongation factor subunit. (1069 aa)
LOC106602907Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1768 aa)
LOC106586527General transcription factor IIF subunit 2-like. (121 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (705 aa)
LOC106562324DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
LOC106604162DNA-directed RNA polymerase II subunit RPB7-like. (178 aa)
ENSSSAP00000064139annotation not available (239 aa)
LOC106561532Transcription initiation factor TFIID subunit 4-like isoform X1. (999 aa)
ENSSSAP00000064944annotation not available (81 aa)
LOC106612273DNA-directed RNA polymerase II subunit RPB7. (172 aa)
ENSSSAP00000065606annotation not available (351 aa)
ENSSSAP00000065847annotation not available (153 aa)
ENSSSAP00000066057annotation not available (440 aa)
LOC106594708Transcription elongation factor SPT6-like. (415 aa)
TCEA1Transcription elongation factor A protein 1-like. (155 aa)
cinpCyclin-dependent kinase 2-interacting protein. (218 aa)
LOC106573262Transcription initiation factor TFIID subunit 4-like isoform X1. (998 aa)
LOC106577941FACT complex subunit SPT16-like isoform X1. (1034 aa)
ENSSSAP00000069592annotation not available (119 aa)
ENSSSAP00000070509annotation not available (69 aa)
LOC106611474RNA polymerase-associated protein RTF1 homolog. (767 aa)
supt4h1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
uvssaUV-stimulated scaffold protein A isoform X1. (749 aa)
LOC106604983Transcription initiation factor TFIID subunit 12-like. (168 aa)
LOC106605011Serine/arginine repetitive matrix protein 1-like isoform X1. (762 aa)
taf7Transcription initiation factor TFIID subunit 7. (371 aa)
LOC106581163RNA polymerase II-associated factor 1 homolog isoform X2. (536 aa)
ENSSSAP00000074105DNA-directed RNA polymerase II subunit RPB11-a-like. (96 aa)
ENSSSAP00000074515Excision repair cross-complementation group 2. (324 aa)
ENSSSAP00000077142annotation not available (165 aa)
LOC106567856Transcription initiation factor TFIID subunit. (1980 aa)
polr2i-2DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
ENSSSAP00000078596annotation not available (160 aa)
cdc73-2Parafibromin isoform X1. (530 aa)
LOC106566458Transcription initiation factor TFIID subunit 13. (124 aa)
paf1RNA polymerase II-associated factor 1 homolog. (532 aa)
LOC106571676Transcription initiation factor IIA subunit 1-like isoform X1. (407 aa)
LOC106562103RNA polymerase-associated protein CTR9 homolog. (1151 aa)
taf12Transcription initiation factor TFIID subunit 12 isoform X1. (168 aa)
LOC106607142DNA-directed RNA polymerases I, II, and III subunit RPABC2-like. (151 aa)
LOC106568989Transcription initiation factor IIB-like. (318 aa)
LOC106584402Transcription elongation factor A protein 3-like isoform X3. (421 aa)
LOC106588677Endonuclease/exonuclease/phosphatase family domain-containing protein 1-like. (554 aa)
ENSSSAP00000089306annotation not available (118 aa)
ENSSSAP00000089324General transcription factor IIF, polypeptide 2b. (213 aa)
LOC106563783Transcription elongation factor SPT6-like. (1693 aa)
LOC106573064Transcription initiation factor TFIID subunit 3-like. (903 aa)
LOC106580766Transcription elongation factor SPT5. (1085 aa)
ercc8DNA excision repair protein ERCC-8 isoform X1. (400 aa)
LOC106608973FACT complex subunit SPT16. (1038 aa)
rpb2Salmo salar DNA-directed RNA polymerase II subunit RPB2 (rpb2), mRNA. (1230 aa)
ENSSSAP00000094070annotation not available (89 aa)
LOC106589653TATA-box-binding protein-like. (299 aa)
ENSSSAP00000094271annotation not available (102 aa)
ENSSSAP00000094959annotation not available (507 aa)
gtf2e1General transcription factor IIE subunit 1. (454 aa)
ctr9RNA polymerase-associated protein CTR9 homolog. (1158 aa)
SUPT6H-2Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1739 aa)
EEPD1Endonuclease/exonuclease/phosphatase family domain-containing protein 1-like. (554 aa)
LOC106562390Transcription initiation factor TFIID subunit 4-like. (987 aa)
ENSSSAP00000097323annotation not available (170 aa)
LOC106567465Transcription elongation factor SPT4-like. (120 aa)
ENSSSAP00000098749annotation not available (862 aa)
tf2bTranscription initiation factor IIB. (321 aa)
LOC100286423FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (709 aa)
LOC106587565Transcription initiation factor TFIID subunit 4-like isoform X2. (997 aa)
LOC106602577FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (670 aa)
gtf2h3General transcription factor IIH subunit 3. (303 aa)
LOC106612892DNA-directed RNA polymerase II subunit RPB4. (142 aa)
ENSSSAP00000104469annotation not available (88 aa)
ENSSSAP00000109872TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (298 aa)
spag16Sperm-associated antigen 16 protein. (632 aa)
ENSSSAP00000110568annotation not available (357 aa)
WDSUB1WD repeat, SAM and U-box domain-containing protein 1-like isoform X3. (482 aa)
ENSSSAP00000113560annotation not available (208 aa)
taf1Transcription initiation factor TFIID subunit. (1943 aa)
LOC106560344Transcription initiation factor TFIID subunit 4-like isoform X1. (995 aa)
taf11Transcription initiation factor TFIID subunit 11. (203 aa)
LOC106588642Transcription initiation factor TFIID subunit 5-like. (747 aa)
rngttPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (603 aa)
ercc6DNA excision repair protein ERCC-6. (1488 aa)
LOC106561664Transcription initiation factor TFIID subunit 3-like. (913 aa)
CROCCRootletin-like isoform X1. (2050 aa)
LOC106577550DNA-directed RNA polymerase II subunit RPB1. (1893 aa)
LOC106565801Transcription initiation factor TFIID subunit 4-like isoform X2. (926 aa)
rpb4DNA-directed RNA polymerase II subunit RPB4. (143 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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