36 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rtf1	RNA polymerase-associated protein RTF1 homolog isoform X1. (694 aa)
	LOC106608676	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1865 aa)
	ENSSSAP00000007773	annotation not available (556 aa)
	polr2c	DNA-directed RNA polymerase II subunit RPB3. (275 aa)
	LOC106591826	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (409 aa)
	ENSSSAP00000021239	annotation not available (181 aa)
	ENSSSAP00000043992	annotation not available (284 aa)
	ENSSSAP00000045384	Polymerase (RNA) II (DNA directed) polypeptide I. (89 aa)
	cdc73	Parafibromin. (530 aa)
	LOC106612364	Protein IWS1 homolog isoform X1. (723 aa)
	ENSSSAP00000049388	annotation not available (114 aa)
	LOC106580633	Protein IWS1 homolog isoform X4. (804 aa)
	LOC106602907	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1768 aa)
	SSRP1	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (705 aa)
	LOC106604162	DNA-directed RNA polymerase II subunit RPB7-like. (178 aa)
	LOC106594708	Transcription elongation factor SPT6-like. (415 aa)
	TCEA1	Transcription elongation factor A protein 1-like. (155 aa)
	cinp	Cyclin-dependent kinase 2-interacting protein. (218 aa)
	LOC106577941	FACT complex subunit SPT16-like isoform X1. (1034 aa)
	LOC106611474	RNA polymerase-associated protein RTF1 homolog. (767 aa)
	LOC106581163	RNA polymerase II-associated factor 1 homolog isoform X2. (536 aa)
	ENSSSAP00000074105	DNA-directed RNA polymerase II subunit RPB11-a-like. (96 aa)
	ENSSSAP00000077142	annotation not available (165 aa)
	cdc73-2	Parafibromin isoform X1. (530 aa)
	paf1	RNA polymerase II-associated factor 1 homolog. (532 aa)
	LOC106562103	RNA polymerase-associated protein CTR9 homolog. (1151 aa)
	LOC106563783	Transcription elongation factor SPT6-like. (1693 aa)
	LOC106580766	Transcription elongation factor SPT5. (1085 aa)
	LOC106608973	FACT complex subunit SPT16. (1038 aa)
	rpb2	Salmo salar DNA-directed RNA polymerase II subunit RPB2 (rpb2), mRNA. (1230 aa)
	ctr9	RNA polymerase-associated protein CTR9 homolog. (1158 aa)
	SUPT6H-2	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1739 aa)
	LOC106567465	Transcription elongation factor SPT4-like. (120 aa)
	LOC100286423	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (709 aa)
	LOC106602577	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (670 aa)
	rpb4	DNA-directed RNA polymerase II subunit RPB4. (143 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000007773	ENSSSAP00000021239	ENSSSAP00000007773	ENSSSAP00000021239	annotation not available	annotation not available	0.824
ENSSSAP00000007773	ENSSSAP00000043992	ENSSSAP00000007773	ENSSSAP00000043992	annotation not available	annotation not available	0.751
ENSSSAP00000007773	ENSSSAP00000045384	ENSSSAP00000007773	ENSSSAP00000045384	annotation not available	Polymerase (RNA) II (DNA directed) polypeptide I.	0.891
ENSSSAP00000007773	ENSSSAP00000049388	ENSSSAP00000007773	ENSSSAP00000049388	annotation not available	annotation not available	0.818
ENSSSAP00000007773	ENSSSAP00000074105	ENSSSAP00000007773	ENSSSAP00000074105	annotation not available	DNA-directed RNA polymerase II subunit RPB11-a-like.	0.909
ENSSSAP00000007773	ENSSSAP00000077142	ENSSSAP00000007773	ENSSSAP00000077142	annotation not available	annotation not available	0.893
ENSSSAP00000007773	LOC106562103	ENSSSAP00000007773	ENSSSAP00000083183	annotation not available	RNA polymerase-associated protein CTR9 homolog.	0.966
ENSSSAP00000007773	LOC106563783	ENSSSAP00000007773	ENSSSAP00000090109	annotation not available	Transcription elongation factor SPT6-like.	0.880
ENSSSAP00000007773	LOC106567465	ENSSSAP00000007773	ENSSSAP00000097565	annotation not available	Transcription elongation factor SPT4-like.	0.954
ENSSSAP00000007773	LOC106577941	ENSSSAP00000007773	ENSSSAP00000068756	annotation not available	FACT complex subunit SPT16-like isoform X1.	0.973
ENSSSAP00000007773	LOC106580633	ENSSSAP00000007773	ENSSSAP00000054766	annotation not available	Protein IWS1 homolog isoform X4.	0.915
ENSSSAP00000007773	LOC106580766	ENSSSAP00000007773	ENSSSAP00000091519	annotation not available	Transcription elongation factor SPT5.	0.963
ENSSSAP00000007773	LOC106581163	ENSSSAP00000007773	ENSSSAP00000073320	annotation not available	RNA polymerase II-associated factor 1 homolog isoform X2.	0.944
ENSSSAP00000007773	LOC106594708	ENSSSAP00000007773	ENSSSAP00000067586	annotation not available	Transcription elongation factor SPT6-like.	0.880
ENSSSAP00000007773	LOC106602907	ENSSSAP00000007773	ENSSSAP00000058112	annotation not available	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.880
ENSSSAP00000007773	LOC106604162	ENSSSAP00000007773	ENSSSAP00000062933	annotation not available	DNA-directed RNA polymerase II subunit RPB7-like.	0.912
ENSSSAP00000007773	LOC106608676	ENSSSAP00000007773	ENSSSAP00000007328	annotation not available	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.863
ENSSSAP00000007773	LOC106608973	ENSSSAP00000007773	ENSSSAP00000093276	annotation not available	FACT complex subunit SPT16.	0.973
ENSSSAP00000007773	LOC106611474	ENSSSAP00000007773	ENSSSAP00000070929	annotation not available	RNA polymerase-associated protein RTF1 homolog.	0.913
ENSSSAP00000007773	LOC106612364	ENSSSAP00000007773	ENSSSAP00000049233	annotation not available	Protein IWS1 homolog isoform X1.	0.915