STRINGSTRING
rtf1 rtf1 LOC106608676 LOC106608676 polr2c polr2c ENSSSAP00000045384 ENSSSAP00000045384 cdc73 cdc73 LOC106604162 LOC106604162 LOC106577941 LOC106577941 LOC106611474 LOC106611474 LOC106581163 LOC106581163 ENSSSAP00000074105 ENSSSAP00000074105 cdc73-2 cdc73-2 paf1 paf1 LOC106562103 LOC106562103 LOC106580766 LOC106580766 LOC106608973 LOC106608973 rpb2 rpb2 ctr9 ctr9 LOC106567465 LOC106567465 LOC100286423 LOC100286423 LOC106602577 LOC106602577 rpb4 rpb4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rtf1RNA polymerase-associated protein RTF1 homolog isoform X1. (694 aa)
LOC106608676DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1865 aa)
polr2cDNA-directed RNA polymerase II subunit RPB3. (275 aa)
ENSSSAP00000045384Polymerase (RNA) II (DNA directed) polypeptide I. (89 aa)
cdc73Parafibromin. (530 aa)
LOC106604162DNA-directed RNA polymerase II subunit RPB7-like. (178 aa)
LOC106577941FACT complex subunit SPT16-like isoform X1. (1034 aa)
LOC106611474RNA polymerase-associated protein RTF1 homolog. (767 aa)
LOC106581163RNA polymerase II-associated factor 1 homolog isoform X2. (536 aa)
ENSSSAP00000074105DNA-directed RNA polymerase II subunit RPB11-a-like. (96 aa)
cdc73-2Parafibromin isoform X1. (530 aa)
paf1RNA polymerase II-associated factor 1 homolog. (532 aa)
LOC106562103RNA polymerase-associated protein CTR9 homolog. (1151 aa)
LOC106580766Transcription elongation factor SPT5. (1085 aa)
LOC106608973FACT complex subunit SPT16. (1038 aa)
rpb2Salmo salar DNA-directed RNA polymerase II subunit RPB2 (rpb2), mRNA. (1230 aa)
ctr9RNA polymerase-associated protein CTR9 homolog. (1158 aa)
LOC106567465Transcription elongation factor SPT4-like. (120 aa)
LOC100286423FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (709 aa)
LOC106602577FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (670 aa)
rpb4DNA-directed RNA polymerase II subunit RPB4. (143 aa)
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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