11 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	grl1	Gamma-aminobutyric acid receptor-associated protein-like 1. (117 aa)
	UBIL	Ubiquitin-like protein. (151 aa)
	LOC106576832	Gamma-aminobutyric acid receptor-associated protein-like 1. (117 aa)
	ENSSSAP00000040139	annotation not available (93 aa)
	LOC106607191	Next to BRCA1 gene 1 protein-like isoform X1. (979 aa)
	optn	Optineurin. (571 aa)
	MIB2	E3 ubiquitin-protein ligase MIB2-like isoform X1. (1044 aa)
	NFATC4	Nuclear factor of activated T-cells, cytoplasmic 4-like isoform X2. (891 aa)
	gkap1	Ubiquilin-1-like isoform X2. (531 aa)
	LOC106579336	Next to BRCA1 gene 1 protein-like isoform X1. (1058 aa)
	LOC106566874	E3 ubiquitin-protein ligase MIB2-like. (1016 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000040139	LOC106566874	ENSSSAP00000040139	ENSSSAP00000111811	annotation not available	E3 ubiquitin-protein ligase MIB2-like.	0.871
ENSSSAP00000040139	LOC106576832	ENSSSAP00000040139	ENSSSAP00000015703	annotation not available	Gamma-aminobutyric acid receptor-associated protein-like 1.	0.403
ENSSSAP00000040139	LOC106579336	ENSSSAP00000040139	ENSSSAP00000102631	annotation not available	Next to BRCA1 gene 1 protein-like isoform X1.	0.935
ENSSSAP00000040139	LOC106607191	ENSSSAP00000040139	ENSSSAP00000049300	annotation not available	Next to BRCA1 gene 1 protein-like isoform X1.	0.935
ENSSSAP00000040139	MIB2	ENSSSAP00000040139	ENSSSAP00000064426	annotation not available	E3 ubiquitin-protein ligase MIB2-like isoform X1.	0.871
ENSSSAP00000040139	NFATC4	ENSSSAP00000040139	ENSSSAP00000072279	annotation not available	Nuclear factor of activated T-cells, cytoplasmic 4-like isoform X2.	0.571
ENSSSAP00000040139	gkap1	ENSSSAP00000040139	ENSSSAP00000091311	annotation not available	Ubiquilin-1-like isoform X2.	0.589
ENSSSAP00000040139	grl1	ENSSSAP00000040139	ENSSSAP00000006412	annotation not available	Gamma-aminobutyric acid receptor-associated protein-like 1.	0.403
ENSSSAP00000040139	optn	ENSSSAP00000040139	ENSSSAP00000056273	annotation not available	Optineurin.	0.583
LOC106566874	ENSSSAP00000040139	ENSSSAP00000111811	ENSSSAP00000040139	E3 ubiquitin-protein ligase MIB2-like.	annotation not available	0.871
LOC106566874	LOC106576832	ENSSSAP00000111811	ENSSSAP00000015703	E3 ubiquitin-protein ligase MIB2-like.	Gamma-aminobutyric acid receptor-associated protein-like 1.	0.826
LOC106566874	LOC106579336	ENSSSAP00000111811	ENSSSAP00000102631	E3 ubiquitin-protein ligase MIB2-like.	Next to BRCA1 gene 1 protein-like isoform X1.	0.819
LOC106566874	LOC106607191	ENSSSAP00000111811	ENSSSAP00000049300	E3 ubiquitin-protein ligase MIB2-like.	Next to BRCA1 gene 1 protein-like isoform X1.	0.819
LOC106566874	MIB2	ENSSSAP00000111811	ENSSSAP00000064426	E3 ubiquitin-protein ligase MIB2-like.	E3 ubiquitin-protein ligase MIB2-like isoform X1.	0.407
LOC106566874	NFATC4	ENSSSAP00000111811	ENSSSAP00000072279	E3 ubiquitin-protein ligase MIB2-like.	Nuclear factor of activated T-cells, cytoplasmic 4-like isoform X2.	0.790
LOC106566874	UBIL	ENSSSAP00000111811	ENSSSAP00000012507	E3 ubiquitin-protein ligase MIB2-like.	Ubiquitin-like protein.	0.871
LOC106566874	gkap1	ENSSSAP00000111811	ENSSSAP00000091311	E3 ubiquitin-protein ligase MIB2-like.	Ubiquilin-1-like isoform X2.	0.807
LOC106566874	grl1	ENSSSAP00000111811	ENSSSAP00000006412	E3 ubiquitin-protein ligase MIB2-like.	Gamma-aminobutyric acid receptor-associated protein-like 1.	0.826
LOC106566874	optn	ENSSSAP00000111811	ENSSSAP00000056273	E3 ubiquitin-protein ligase MIB2-like.	Optineurin.	0.507
LOC106576832	ENSSSAP00000040139	ENSSSAP00000015703	ENSSSAP00000040139	Gamma-aminobutyric acid receptor-associated protein-like 1.	annotation not available	0.403