13 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106601657	Transmembrane and ubiquitin-like domain-containing protein 2. (333 aa)
	LOC106568619	Transmembrane and ubiquitin-like domain-containing protein 1. (332 aa)
	LOC106564501	E3 ubiquitin-protein ligase RNF185. (192 aa)
	ENSSSAP00000014870	annotation not available (166 aa)
	tmub2	Transmembrane and Ubiquitin-like domain-containing protein 2. (310 aa)
	LOC106564749	UPF0669 protein C6orf120 homolog. (114 aa)
	CF120	CF120 protein precursor. (149 aa)
	LOC106570055	E3 ubiquitin-protein ligase RNF5-like. (213 aa)
	RNF5	E3 ubiquitin-protein ligase RNF5-like. (202 aa)
	erln2	Erlin-2. (353 aa)
	LOC106576878	Erlin-1. (382 aa)
	LOC106568218	E3 ubiquitin-protein ligase RNF185-like. (190 aa)
	ERLIN2	Erlin-2-like isoform X1. (363 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CF120	ENSSSAP00000014870	ENSSSAP00000061990	ENSSSAP00000014870	CF120 protein precursor.	annotation not available	0.400
CF120	ERLIN2	ENSSSAP00000061990	ENSSSAP00000116554	CF120 protein precursor.	Erlin-2-like isoform X1.	0.476
CF120	LOC106568619	ENSSSAP00000061990	ENSSSAP00000009962	CF120 protein precursor.	Transmembrane and ubiquitin-like domain-containing protein 1.	0.599
CF120	LOC106576878	ENSSSAP00000061990	ENSSSAP00000114361	CF120 protein precursor.	Erlin-1.	0.476
CF120	LOC106601657	ENSSSAP00000061990	ENSSSAP00000006760	CF120 protein precursor.	Transmembrane and ubiquitin-like domain-containing protein 2.	0.497
CF120	erln2	ENSSSAP00000061990	ENSSSAP00000110054	CF120 protein precursor.	Erlin-2.	0.476
CF120	tmub2	ENSSSAP00000061990	ENSSSAP00000028878	CF120 protein precursor.	Transmembrane and Ubiquitin-like domain-containing protein 2.	0.497
ENSSSAP00000014870	CF120	ENSSSAP00000014870	ENSSSAP00000061990	annotation not available	CF120 protein precursor.	0.400
ENSSSAP00000014870	ERLIN2	ENSSSAP00000014870	ENSSSAP00000116554	annotation not available	Erlin-2-like isoform X1.	0.532
ENSSSAP00000014870	LOC106564749	ENSSSAP00000014870	ENSSSAP00000034524	annotation not available	UPF0669 protein C6orf120 homolog.	0.400
ENSSSAP00000014870	LOC106568619	ENSSSAP00000014870	ENSSSAP00000009962	annotation not available	Transmembrane and ubiquitin-like domain-containing protein 1.	0.599
ENSSSAP00000014870	LOC106576878	ENSSSAP00000014870	ENSSSAP00000114361	annotation not available	Erlin-1.	0.576
ENSSSAP00000014870	erln2	ENSSSAP00000014870	ENSSSAP00000110054	annotation not available	Erlin-2.	0.532
ERLIN2	CF120	ENSSSAP00000116554	ENSSSAP00000061990	Erlin-2-like isoform X1.	CF120 protein precursor.	0.476
ERLIN2	ENSSSAP00000014870	ENSSSAP00000116554	ENSSSAP00000014870	Erlin-2-like isoform X1.	annotation not available	0.532
ERLIN2	LOC106564501	ENSSSAP00000116554	ENSSSAP00000012299	Erlin-2-like isoform X1.	E3 ubiquitin-protein ligase RNF185.	0.720
ERLIN2	LOC106564749	ENSSSAP00000116554	ENSSSAP00000034524	Erlin-2-like isoform X1.	UPF0669 protein C6orf120 homolog.	0.476
ERLIN2	LOC106568218	ENSSSAP00000116554	ENSSSAP00000115099	Erlin-2-like isoform X1.	E3 ubiquitin-protein ligase RNF185-like.	0.720
ERLIN2	LOC106568619	ENSSSAP00000116554	ENSSSAP00000009962	Erlin-2-like isoform X1.	Transmembrane and ubiquitin-like domain-containing protein 1.	0.750
ERLIN2	LOC106570055	ENSSSAP00000116554	ENSSSAP00000098718	Erlin-2-like isoform X1.	E3 ubiquitin-protein ligase RNF5-like.	0.720