26 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106588764	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (542 aa)
	ku70	ATP-dependent DNA helicase 2 subunit 1 isoform X1. (619 aa)
	LOC106562128	Meiotic recombination protein REC114-like. (231 aa)
	LOC106574321	Protein CNPPD1-like. (444 aa)
	LOC106564589	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family. (565 aa)
	neil1	Endonuclease 8-like 1 isoform X2. (421 aa)
	neil1-2	Endonuclease 8-like 1 isoform X1. (151 aa)
	LOC106573851	Non-homologous end-joining factor 1-like isoform X1. (423 aa)
	LOC106605322	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (510 aa)
	lig4	DNA ligase. (927 aa)
	LOC106569276	DNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family. (554 aa)
	ENSSSAP00000030774	annotation not available (144 aa)
	LOC106612627	Bifunctional polynucleotide phosphatase/kinase-like. (619 aa)
	LOC106580473	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (312 aa)
	polb	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (344 aa)
	LOC106605164	DNA repair protein XRCC1-like. (989 aa)
	lig3	DNA ligase. (1023 aa)
	xrcc4	DNA repair protein XRCC4 isoform X2. (336 aa)
	LOC106576788	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (511 aa)
	LOC106582635	DNA repair protein XRCC1-like. (633 aa)
	aplf	Aprataxin and PNK-like factor isoform X1. (356 aa)
	prkdc	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family. (3937 aa)
	LOC106585761	DNA repair protein XRCC4-like isoform X1. (317 aa)
	LOC106603393	Short transient receptor potential channel 2-like. (448 aa)
	ENSSSAP00000115415	annotation not available (257 aa)
	ENSSSAP00000115468	X-ray repair complementing defective repair in Chinese hamster cells 6. (364 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000030774	ENSSSAP00000115415	ENSSSAP00000030774	ENSSSAP00000115415	annotation not available	annotation not available	0.400
ENSSSAP00000030774	ENSSSAP00000115468	ENSSSAP00000030774	ENSSSAP00000115468	annotation not available	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.986
ENSSSAP00000030774	LOC106562128	ENSSSAP00000030774	ENSSSAP00000012979	annotation not available	Meiotic recombination protein REC114-like.	0.821
ENSSSAP00000030774	LOC106564589	ENSSSAP00000030774	ENSSSAP00000017593	annotation not available	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	0.868
ENSSSAP00000030774	LOC106569276	ENSSSAP00000030774	ENSSSAP00000029929	annotation not available	DNA-directed DNA/RNA polymerase mu; Gap-filling polymerase involved in repair of DNA double- strand breaks by non-homologous end joining (NHEJ). Belongs to the DNA polymerase type-X family.	0.793
ENSSSAP00000030774	LOC106573851	ENSSSAP00000030774	ENSSSAP00000018996	annotation not available	Non-homologous end-joining factor 1-like isoform X1.	0.925
ENSSSAP00000030774	LOC106574321	ENSSSAP00000030774	ENSSSAP00000015793	annotation not available	Protein CNPPD1-like.	0.923
ENSSSAP00000030774	LOC106576788	ENSSSAP00000030774	ENSSSAP00000076757	annotation not available	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	0.793
ENSSSAP00000030774	LOC106580473	ENSSSAP00000030774	ENSSSAP00000043267	annotation not available	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.819
ENSSSAP00000030774	LOC106582635	ENSSSAP00000030774	ENSSSAP00000083146	annotation not available	DNA repair protein XRCC1-like.	0.938
ENSSSAP00000030774	LOC106585761	ENSSSAP00000030774	ENSSSAP00000096106	annotation not available	DNA repair protein XRCC4-like isoform X1.	0.993
ENSSSAP00000030774	LOC106588764	ENSSSAP00000030774	ENSSSAP00000000730	annotation not available	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.868
ENSSSAP00000030774	LOC106603393	ENSSSAP00000030774	ENSSSAP00000114068	annotation not available	Short transient receptor potential channel 2-like.	0.932
ENSSSAP00000030774	LOC106605164	ENSSSAP00000030774	ENSSSAP00000054789	annotation not available	DNA repair protein XRCC1-like.	0.938
ENSSSAP00000030774	LOC106605322	ENSSSAP00000030774	ENSSSAP00000026244	annotation not available	DNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator.	0.793
ENSSSAP00000030774	LOC106612627	ENSSSAP00000030774	ENSSSAP00000033738	annotation not available	Bifunctional polynucleotide phosphatase/kinase-like.	0.822
ENSSSAP00000030774	aplf	ENSSSAP00000030774	ENSSSAP00000085317	annotation not available	Aprataxin and PNK-like factor isoform X1.	0.917
ENSSSAP00000030774	ku70	ENSSSAP00000030774	ENSSSAP00000003373	annotation not available	ATP-dependent DNA helicase 2 subunit 1 isoform X1.	0.986
ENSSSAP00000030774	lig3	ENSSSAP00000030774	ENSSSAP00000058163	annotation not available	DNA ligase.	0.400
ENSSSAP00000030774	neil1	ENSSSAP00000030774	ENSSSAP00000018288	annotation not available	Endonuclease 8-like 1 isoform X2.	0.544