5 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	neil1-2	Endonuclease 8-like 1 isoform X1. (151 aa)
	LOC106612627	Bifunctional polynucleotide phosphatase/kinase-like. (619 aa)
	polb	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (344 aa)
	lig3	DNA ligase. (1023 aa)
	LOC106582635	DNA repair protein XRCC1-like. (633 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106582635	LOC106612627	ENSSSAP00000083146	ENSSSAP00000033738	DNA repair protein XRCC1-like.	Bifunctional polynucleotide phosphatase/kinase-like.	0.942
LOC106582635	lig3	ENSSSAP00000083146	ENSSSAP00000058163	DNA repair protein XRCC1-like.	DNA ligase.	0.989
LOC106582635	neil1-2	ENSSSAP00000083146	ENSSSAP00000018312	DNA repair protein XRCC1-like.	Endonuclease 8-like 1 isoform X1.	0.842
LOC106582635	polb	ENSSSAP00000083146	ENSSSAP00000043656	DNA repair protein XRCC1-like.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.983
LOC106612627	LOC106582635	ENSSSAP00000033738	ENSSSAP00000083146	Bifunctional polynucleotide phosphatase/kinase-like.	DNA repair protein XRCC1-like.	0.942
LOC106612627	lig3	ENSSSAP00000033738	ENSSSAP00000058163	Bifunctional polynucleotide phosphatase/kinase-like.	DNA ligase.	0.927
LOC106612627	neil1-2	ENSSSAP00000033738	ENSSSAP00000018312	Bifunctional polynucleotide phosphatase/kinase-like.	Endonuclease 8-like 1 isoform X1.	0.822
LOC106612627	polb	ENSSSAP00000033738	ENSSSAP00000043656	Bifunctional polynucleotide phosphatase/kinase-like.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.940
lig3	LOC106582635	ENSSSAP00000058163	ENSSSAP00000083146	DNA ligase.	DNA repair protein XRCC1-like.	0.989
lig3	LOC106612627	ENSSSAP00000058163	ENSSSAP00000033738	DNA ligase.	Bifunctional polynucleotide phosphatase/kinase-like.	0.927
lig3	neil1-2	ENSSSAP00000058163	ENSSSAP00000018312	DNA ligase.	Endonuclease 8-like 1 isoform X1.	0.692
lig3	polb	ENSSSAP00000058163	ENSSSAP00000043656	DNA ligase.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.905
neil1-2	LOC106582635	ENSSSAP00000018312	ENSSSAP00000083146	Endonuclease 8-like 1 isoform X1.	DNA repair protein XRCC1-like.	0.842
neil1-2	LOC106612627	ENSSSAP00000018312	ENSSSAP00000033738	Endonuclease 8-like 1 isoform X1.	Bifunctional polynucleotide phosphatase/kinase-like.	0.822
neil1-2	lig3	ENSSSAP00000018312	ENSSSAP00000058163	Endonuclease 8-like 1 isoform X1.	DNA ligase.	0.692
neil1-2	polb	ENSSSAP00000018312	ENSSSAP00000043656	Endonuclease 8-like 1 isoform X1.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.872
polb	LOC106582635	ENSSSAP00000043656	ENSSSAP00000083146	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	DNA repair protein XRCC1-like.	0.983
polb	LOC106612627	ENSSSAP00000043656	ENSSSAP00000033738	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	Bifunctional polynucleotide phosphatase/kinase-like.	0.940
polb	lig3	ENSSSAP00000043656	ENSSSAP00000058163	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	DNA ligase.	0.905
polb	neil1-2	ENSSSAP00000043656	ENSSSAP00000018312	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	Endonuclease 8-like 1 isoform X1.	0.872