11 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106588764	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (542 aa)
	ku70	ATP-dependent DNA helicase 2 subunit 1 isoform X1. (619 aa)
	LOC106564589	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family. (565 aa)
	LOC106573851	Non-homologous end-joining factor 1-like isoform X1. (423 aa)
	lig4	DNA ligase. (927 aa)
	ENSSSAP00000030774	annotation not available (144 aa)
	xrcc4	DNA repair protein XRCC4 isoform X2. (336 aa)
	aplf	Aprataxin and PNK-like factor isoform X1. (356 aa)
	prkdc	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family. (3937 aa)
	LOC106585761	DNA repair protein XRCC4-like isoform X1. (317 aa)
	ENSSSAP00000115468	X-ray repair complementing defective repair in Chinese hamster cells 6. (364 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000030774	ENSSSAP00000115468	ENSSSAP00000030774	ENSSSAP00000115468	annotation not available	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.986
ENSSSAP00000030774	LOC106564589	ENSSSAP00000030774	ENSSSAP00000017593	annotation not available	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	0.868
ENSSSAP00000030774	LOC106573851	ENSSSAP00000030774	ENSSSAP00000018996	annotation not available	Non-homologous end-joining factor 1-like isoform X1.	0.925
ENSSSAP00000030774	LOC106585761	ENSSSAP00000030774	ENSSSAP00000096106	annotation not available	DNA repair protein XRCC4-like isoform X1.	0.993
ENSSSAP00000030774	LOC106588764	ENSSSAP00000030774	ENSSSAP00000000730	annotation not available	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.868
ENSSSAP00000030774	aplf	ENSSSAP00000030774	ENSSSAP00000085317	annotation not available	Aprataxin and PNK-like factor isoform X1.	0.917
ENSSSAP00000030774	ku70	ENSSSAP00000030774	ENSSSAP00000003373	annotation not available	ATP-dependent DNA helicase 2 subunit 1 isoform X1.	0.986
ENSSSAP00000030774	prkdc	ENSSSAP00000030774	ENSSSAP00000092902	annotation not available	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.	0.985
ENSSSAP00000030774	xrcc4	ENSSSAP00000030774	ENSSSAP00000059144	annotation not available	DNA repair protein XRCC4 isoform X2.	0.895
ENSSSAP00000115468	ENSSSAP00000030774	ENSSSAP00000115468	ENSSSAP00000030774	X-ray repair complementing defective repair in Chinese hamster cells 6.	annotation not available	0.986
ENSSSAP00000115468	LOC106564589	ENSSSAP00000115468	ENSSSAP00000017593	X-ray repair complementing defective repair in Chinese hamster cells 6.	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	0.822
ENSSSAP00000115468	LOC106573851	ENSSSAP00000115468	ENSSSAP00000018996	X-ray repair complementing defective repair in Chinese hamster cells 6.	Non-homologous end-joining factor 1-like isoform X1.	0.896
ENSSSAP00000115468	LOC106585761	ENSSSAP00000115468	ENSSSAP00000096106	X-ray repair complementing defective repair in Chinese hamster cells 6.	DNA repair protein XRCC4-like isoform X1.	0.973
ENSSSAP00000115468	LOC106588764	ENSSSAP00000115468	ENSSSAP00000000730	X-ray repair complementing defective repair in Chinese hamster cells 6.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.822
ENSSSAP00000115468	aplf	ENSSSAP00000115468	ENSSSAP00000085317	X-ray repair complementing defective repair in Chinese hamster cells 6.	Aprataxin and PNK-like factor isoform X1.	0.972
ENSSSAP00000115468	lig4	ENSSSAP00000115468	ENSSSAP00000029249	X-ray repair complementing defective repair in Chinese hamster cells 6.	DNA ligase.	0.986
ENSSSAP00000115468	prkdc	ENSSSAP00000115468	ENSSSAP00000092902	X-ray repair complementing defective repair in Chinese hamster cells 6.	DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.	0.994
ENSSSAP00000115468	xrcc4	ENSSSAP00000115468	ENSSSAP00000059144	X-ray repair complementing defective repair in Chinese hamster cells 6.	DNA repair protein XRCC4 isoform X2.	0.853
LOC106564589	ENSSSAP00000030774	ENSSSAP00000017593	ENSSSAP00000030774	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	annotation not available	0.868
LOC106564589	ENSSSAP00000115468	ENSSSAP00000017593	ENSSSAP00000115468	DNA polymerase lambda-like; Belongs to the DNA polymerase type-X family.	X-ray repair complementing defective repair in Chinese hamster cells 6.	0.822