68 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106592746	Tumor necrosis factor ligand superfamily member 10-like; Belongs to the tumor necrosis factor family. (160 aa)
	LOC106601456	Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family. (238 aa)
	LOC106574253	Tumor necrosis factor receptor superfamily member 11B-like. (328 aa)
	ENSSSAP00000009444	annotation not available (120 aa)
	ENSSSAP00000009531	annotation not available (144 aa)
	ENSSSAP00000010071	annotation not available (205 aa)
	ENSSSAP00000011514	annotation not available (166 aa)
	LOC106574253-2	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	LOC106574253-3	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	ENSSSAP00000023786	annotation not available (255 aa)
	LOC106574253-4	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	LOC106563020	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (596 aa)
	LOC106598387	Tumor necrosis factor receptor superfamily member 11B-like. (315 aa)
	tn13b	Tumor necrosis factor ligand superfamily member 13B isoform X1; Belongs to the tumor necrosis factor family. (265 aa)
	LOC106575707	Tumor necrosis factor receptor superfamily member 5-like. (316 aa)
	tnr5	Tumor necrosis factor receptor superfamily member 5 precursor. (354 aa)
	tnfrsf17	Tumor necrosis factor receptor superfamily member 17. (168 aa)
	LOC106574253-5	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	LOC106575843	Uncharacterized protein LOC106575843. (345 aa)
	LOC106565991	Tumor necrosis factor receptor superfamily member 10C-like. (289 aa)
	LOC106565992	Tumor necrosis factor receptor superfamily member 9-like isoform X1. (259 aa)
	tnfrsf6b	Tumor necrosis factor receptor superfamily member 6B. (287 aa)
	LOC100136509	Tumor necrosis factor alpha. (244 aa)
	LOC106574253-6	Tumor necrosis factor receptor superfamily member 11B-like. (330 aa)
	LOC106574239	Tumor necrosis factor receptor superfamily member 11B-like. (406 aa)
	LOC106577651	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family. (253 aa)
	LOC106590556	Uncharacterized protein LOC106590556. (682 aa)
	ENSSSAP00000046167	annotation not available (165 aa)
	LOC106606846	Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family. (238 aa)
	ENSSSAP00000050466	annotation not available (77 aa)
	ENSSSAP00000053338	annotation not available (192 aa)
	tnfsf11	Tumor necrosis factor ligand superfamily member 11 isoform X1; Belongs to the tumor necrosis factor family. (284 aa)
	tnf-alpha-2	Salmo salar tumor necrosis factor alpha-2 precursor (tnf-alpha-2), mRNA. (247 aa)
	LOC106582173	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (270 aa)
	LOC106592211	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (261 aa)
	LOC106589058	Tumor necrosis factor-like. (244 aa)
	LOC100136479	CD83 antigen isoform X2. (229 aa)
	LOC106591189	Tumor necrosis factor ligand superfamily member 13B-like isoform X2. (218 aa)
	LOC106572808	Tumor necrosis factor receptor superfamily member 14-like isoform X1. (263 aa)
	ENSSSAP00000068649	annotation not available (270 aa)
	LOC106572816	Tumor necrosis factor receptor superfamily member 5-like isoform X2. (239 aa)
	LOC106572813	Tumor necrosis factor receptor superfamily member 5-like. (245 aa)
	tnr14	Tumor necrosis factor receptor superfamily member 14 isoform X4. (246 aa)
	LOC106569927	Tumor necrosis factor receptor superfamily member 11B-like. (302 aa)
	cd40l	CD40 ligand; Belongs to the tumor necrosis factor family. (264 aa)
	ENSSSAP00000074706	annotation not available (192 aa)
	LOC106567123	Tumor necrosis factor receptor superfamily member 5-like. (317 aa)
	tnfrsf13b	Tumor necrosis factor receptor superfamily member 13B isoform X1. (256 aa)
	tnf-alpha-1	Tumor necrosis factor alpha-1 precursor. (246 aa)
	LOC106586658	Tumor necrosis factor ligand superfamily member 13B-like; Belongs to the tumor necrosis factor family. (253 aa)
	ENSSSAP00000082868	annotation not available (160 aa)
	LOC106572181	Tumor necrosis factor receptor superfamily member 6B-like. (285 aa)
	LOC106582620	Tumor necrosis factor receptor superfamily member 5-like. (240 aa)
	ENSSSAP00000085883	annotation not available (242 aa)
	LOC106567387	Tumor necrosis factor receptor superfamily member 1A-like. (452 aa)
	LOC106582173-2	Tumor necrosis factor ligand superfamily member 11-like. (270 aa)
	ENSSSAP00000095655	annotation not available (440 aa)
	tnfsf13	Tumor necrosis factor ligand superfamily member 13 isoform X1; Belongs to the tumor necrosis factor family. (235 aa)
	ENSSSAP00000100253	Tumor necrosis factor receptor superfamily member 5-like. (655 aa)
	LOC106572768	Tumor necrosis factor receptor superfamily member 14-like. (241 aa)
	LOC106572767	Tumor necrosis factor receptor superfamily member 5-like. (242 aa)
	LOC106572765	Tumor necrosis factor receptor superfamily member 14-like. (255 aa)
	LOC106575455	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family. (261 aa)
	tnfrsf11a	Tumor necrosis factor receptor superfamily member 11A. (663 aa)
	LOC106589221	Tumor necrosis factor receptor superfamily member 13B-like. (260 aa)
	LOC106588364	Tumor necrosis factor receptor superfamily member 11B-like. (297 aa)
	LOC106608761	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family. (242 aa)
	LOC106565709	Tumor necrosis factor receptor superfamily member 1B-like. (455 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000009444	ENSSSAP00000010071	ENSSSAP00000009444	ENSSSAP00000010071	annotation not available	annotation not available	0.691
ENSSSAP00000009444	ENSSSAP00000023786	ENSSSAP00000009444	ENSSSAP00000023786	annotation not available	annotation not available	0.651
ENSSSAP00000009444	ENSSSAP00000046167	ENSSSAP00000009444	ENSSSAP00000046167	annotation not available	annotation not available	0.622
ENSSSAP00000009444	ENSSSAP00000085883	ENSSSAP00000009444	ENSSSAP00000085883	annotation not available	annotation not available	0.936
ENSSSAP00000009444	LOC100136509	ENSSSAP00000009444	ENSSSAP00000041208	annotation not available	Tumor necrosis factor alpha.	0.622
ENSSSAP00000009444	LOC106575455	ENSSSAP00000009444	ENSSSAP00000107438	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.936
ENSSSAP00000009444	LOC106575843	ENSSSAP00000009444	ENSSSAP00000037557	annotation not available	Uncharacterized protein LOC106575843.	0.651
ENSSSAP00000009444	LOC106577651	ENSSSAP00000009444	ENSSSAP00000044799	annotation not available	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family.	0.443
ENSSSAP00000009444	LOC106582173	ENSSSAP00000009444	ENSSSAP00000056233	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.936
ENSSSAP00000009444	LOC106582173-2	ENSSSAP00000009444	ENSSSAP00000089450	annotation not available	Tumor necrosis factor ligand superfamily member 11-like.	0.936
ENSSSAP00000009444	LOC106589058	ENSSSAP00000009444	ENSSSAP00000059212	annotation not available	Tumor necrosis factor-like.	0.622
ENSSSAP00000009444	LOC106590556	ENSSSAP00000009444	ENSSSAP00000046060	annotation not available	Uncharacterized protein LOC106590556.	0.600
ENSSSAP00000009444	LOC106592211	ENSSSAP00000009444	ENSSSAP00000058440	annotation not available	Tumor necrosis factor ligand superfamily member 11-like; Belongs to the tumor necrosis factor family.	0.936
ENSSSAP00000009444	LOC106592746	ENSSSAP00000009444	ENSSSAP00000000773	annotation not available	Tumor necrosis factor ligand superfamily member 10-like; Belongs to the tumor necrosis factor family.	0.691
ENSSSAP00000009444	LOC106608761	ENSSSAP00000009444	ENSSSAP00000117840	annotation not available	Tumor necrosis factor ligand superfamily member 12-like; Belongs to the tumor necrosis factor family.	0.443
ENSSSAP00000009444	cd40l	ENSSSAP00000009444	ENSSSAP00000070829	annotation not available	CD40 ligand; Belongs to the tumor necrosis factor family.	0.789
ENSSSAP00000009444	tnf-alpha-1	ENSSSAP00000009444	ENSSSAP00000075795	annotation not available	Tumor necrosis factor alpha-1 precursor.	0.513
ENSSSAP00000009444	tnf-alpha-2	ENSSSAP00000009444	ENSSSAP00000055689	annotation not available	Salmo salar tumor necrosis factor alpha-2 precursor (tnf-alpha-2), mRNA.	0.513
ENSSSAP00000009444	tnfrsf11a	ENSSSAP00000009444	ENSSSAP00000109112	annotation not available	Tumor necrosis factor receptor superfamily member 11A.	0.600
ENSSSAP00000009444	tnfsf11	ENSSSAP00000009444	ENSSSAP00000055563	annotation not available	Tumor necrosis factor ligand superfamily member 11 isoform X1; Belongs to the tumor necrosis factor family.	0.936