16 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106569686	Neurocan core protein-like. (1277 aa)
	LOC106572712	Neural cell adhesion molecule L1-like isoform X2. (1289 aa)
	LOC106603640	Neural cell adhesion molecule 1-like isoform X6. (1072 aa)
	LOC106575122	Neural cell adhesion molecule 2-like isoform X1. (892 aa)
	LOC106573779	Alpha-2,8-sialyltransferase 8B-like; Belongs to the glycosyltransferase 29 family. (378 aa)
	LOC106574338	Neural cell adhesion molecule 2-like. (835 aa)
	nca11	Neural cell adhesion molecule 1-A isoform X1. (748 aa)
	LOC106565094	Contactin-2-like. (1043 aa)
	LOC106605634	Neural cell adhesion molecule 1-B-like isoform X1. (643 aa)
	LOC106613725	Neurocan core protein-like. (1379 aa)
	LOC106567028	Neural cell adhesion molecule L1-like isoform X5. (1472 aa)
	LOC106581152	Neural cell adhesion molecule 1-like isoform X4. (1418 aa)
	st8sia4	CMP-N-acetylneuraminate-poly-alpha-2, 8-sialyltransferase; Belongs to the glycosyltransferase 29 family. (358 aa)
	ncam1	Neural cell adhesion molecule 1 isoform X1. (1266 aa)
	LOC106561148	Alpha-2,8-sialyltransferase 8B-like isoform X1; Belongs to the glycosyltransferase 29 family. (378 aa)
	LOC106583505	Contactin-2-like. (1138 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106561148	LOC106574338	ENSSSAP00000101164	ENSSSAP00000037040	Alpha-2,8-sialyltransferase 8B-like isoform X1; Belongs to the glycosyltransferase 29 family.	Neural cell adhesion molecule 2-like.	0.598
LOC106561148	LOC106575122	ENSSSAP00000101164	ENSSSAP00000029503	Alpha-2,8-sialyltransferase 8B-like isoform X1; Belongs to the glycosyltransferase 29 family.	Neural cell adhesion molecule 2-like isoform X1.	0.598
LOC106561148	LOC106581152	ENSSSAP00000101164	ENSSSAP00000077379	Alpha-2,8-sialyltransferase 8B-like isoform X1; Belongs to the glycosyltransferase 29 family.	Neural cell adhesion molecule 1-like isoform X4.	0.598
LOC106561148	LOC106603640	ENSSSAP00000101164	ENSSSAP00000024521	Alpha-2,8-sialyltransferase 8B-like isoform X1; Belongs to the glycosyltransferase 29 family.	Neural cell adhesion molecule 1-like isoform X6.	0.598
LOC106561148	LOC106605634	ENSSSAP00000101164	ENSSSAP00000055847	Alpha-2,8-sialyltransferase 8B-like isoform X1; Belongs to the glycosyltransferase 29 family.	Neural cell adhesion molecule 1-B-like isoform X1.	0.598
LOC106561148	nca11	ENSSSAP00000101164	ENSSSAP00000041337	Alpha-2,8-sialyltransferase 8B-like isoform X1; Belongs to the glycosyltransferase 29 family.	Neural cell adhesion molecule 1-A isoform X1.	0.598
LOC106561148	ncam1	ENSSSAP00000101164	ENSSSAP00000099602	Alpha-2,8-sialyltransferase 8B-like isoform X1; Belongs to the glycosyltransferase 29 family.	Neural cell adhesion molecule 1 isoform X1.	0.598
LOC106565094	LOC106567028	ENSSSAP00000055549	ENSSSAP00000073685	Contactin-2-like.	Neural cell adhesion molecule L1-like isoform X5.	0.969
LOC106565094	LOC106569686	ENSSSAP00000055549	ENSSSAP00000008959	Contactin-2-like.	Neurocan core protein-like.	0.403
LOC106565094	LOC106572712	ENSSSAP00000055549	ENSSSAP00000019510	Contactin-2-like.	Neural cell adhesion molecule L1-like isoform X2.	0.969
LOC106565094	LOC106574338	ENSSSAP00000055549	ENSSSAP00000037040	Contactin-2-like.	Neural cell adhesion molecule 2-like.	0.585
LOC106565094	LOC106575122	ENSSSAP00000055549	ENSSSAP00000029503	Contactin-2-like.	Neural cell adhesion molecule 2-like isoform X1.	0.585
LOC106565094	LOC106581152	ENSSSAP00000055549	ENSSSAP00000077379	Contactin-2-like.	Neural cell adhesion molecule 1-like isoform X4.	0.585
LOC106565094	LOC106583505	ENSSSAP00000055549	ENSSSAP00000118144	Contactin-2-like.	Contactin-2-like.	0.900
LOC106565094	LOC106603640	ENSSSAP00000055549	ENSSSAP00000024521	Contactin-2-like.	Neural cell adhesion molecule 1-like isoform X6.	0.585
LOC106565094	LOC106605634	ENSSSAP00000055549	ENSSSAP00000055847	Contactin-2-like.	Neural cell adhesion molecule 1-B-like isoform X1.	0.585
LOC106565094	LOC106613725	ENSSSAP00000055549	ENSSSAP00000071976	Contactin-2-like.	Neurocan core protein-like.	0.403
LOC106565094	nca11	ENSSSAP00000055549	ENSSSAP00000041337	Contactin-2-like.	Neural cell adhesion molecule 1-A isoform X1.	0.585
LOC106565094	ncam1	ENSSSAP00000055549	ENSSSAP00000099602	Contactin-2-like.	Neural cell adhesion molecule 1 isoform X1.	0.585
LOC106567028	LOC106565094	ENSSSAP00000073685	ENSSSAP00000055549	Neural cell adhesion molecule L1-like isoform X5.	Contactin-2-like.	0.969