5 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cachd1	VWFA and cache domain-containing protein 1 isoform X1. (1318 aa)
	LOC106613615	Membralin-like isoform X1. (733 aa)
	smpdl3b	Acid sphingomyelinase-like phosphodiesterase. (461 aa)
	LOC106573922	Membralin-like isoform X1. (717 aa)
	LOC106584031	VWFA and cache domain-containing protein 1. (1357 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106573922	LOC106584031	ENSSSAP00000096297	ENSSSAP00000119263	Membralin-like isoform X1.	VWFA and cache domain-containing protein 1.	0.589
LOC106573922	cachd1	ENSSSAP00000096297	ENSSSAP00000033181	Membralin-like isoform X1.	VWFA and cache domain-containing protein 1 isoform X1.	0.589
LOC106573922	smpdl3b	ENSSSAP00000096297	ENSSSAP00000052745	Membralin-like isoform X1.	Acid sphingomyelinase-like phosphodiesterase.	0.601
LOC106584031	LOC106573922	ENSSSAP00000119263	ENSSSAP00000096297	VWFA and cache domain-containing protein 1.	Membralin-like isoform X1.	0.589
LOC106584031	LOC106613615	ENSSSAP00000119263	ENSSSAP00000049226	VWFA and cache domain-containing protein 1.	Membralin-like isoform X1.	0.589
LOC106584031	smpdl3b	ENSSSAP00000119263	ENSSSAP00000052745	VWFA and cache domain-containing protein 1.	Acid sphingomyelinase-like phosphodiesterase.	0.601
LOC106613615	LOC106584031	ENSSSAP00000049226	ENSSSAP00000119263	Membralin-like isoform X1.	VWFA and cache domain-containing protein 1.	0.589
LOC106613615	cachd1	ENSSSAP00000049226	ENSSSAP00000033181	Membralin-like isoform X1.	VWFA and cache domain-containing protein 1 isoform X1.	0.589
LOC106613615	smpdl3b	ENSSSAP00000049226	ENSSSAP00000052745	Membralin-like isoform X1.	Acid sphingomyelinase-like phosphodiesterase.	0.601
cachd1	LOC106573922	ENSSSAP00000033181	ENSSSAP00000096297	VWFA and cache domain-containing protein 1 isoform X1.	Membralin-like isoform X1.	0.589
cachd1	LOC106613615	ENSSSAP00000033181	ENSSSAP00000049226	VWFA and cache domain-containing protein 1 isoform X1.	Membralin-like isoform X1.	0.589
cachd1	smpdl3b	ENSSSAP00000033181	ENSSSAP00000052745	VWFA and cache domain-containing protein 1 isoform X1.	Acid sphingomyelinase-like phosphodiesterase.	0.601
smpdl3b	LOC106573922	ENSSSAP00000052745	ENSSSAP00000096297	Acid sphingomyelinase-like phosphodiesterase.	Membralin-like isoform X1.	0.601
smpdl3b	LOC106584031	ENSSSAP00000052745	ENSSSAP00000119263	Acid sphingomyelinase-like phosphodiesterase.	VWFA and cache domain-containing protein 1.	0.601
smpdl3b	LOC106613615	ENSSSAP00000052745	ENSSSAP00000049226	Acid sphingomyelinase-like phosphodiesterase.	Membralin-like isoform X1.	0.601
smpdl3b	cachd1	ENSSSAP00000052745	ENSSSAP00000033181	Acid sphingomyelinase-like phosphodiesterase.	VWFA and cache domain-containing protein 1 isoform X1.	0.601