22 items (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106601526	Uncharacterized protein LOC106601526 isoform X2. (528 aa)
	ENSSSAP00000003574	annotation not available (207 aa)
	LOC106564280	Tektin-4-like. (201 aa)
	ENSSSAP00000023369	Meiosis/spermiogenesis associated 1. (87 aa)
	c2cd6	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 11 protein isoform X1. (949 aa)
	meig1	Meiosis expressed gene 1 protein homolog. (93 aa)
	LOC106614018	Uncharacterized protein LOC106614018. (70 aa)
	LOC106575691	Ropporin-1-like. (279 aa)
	LOC106584254	Uncharacterized protein LOC106584254 isoform X2. (72 aa)
	ENSSSAP00000045815	annotation not available (270 aa)
	LOC106612785	Nucleoredoxin-like. (418 aa)
	ENSSSAP00000053048	annotation not available (123 aa)
	ropn1l	Ropporin-1-like protein isoform X2. (229 aa)
	DNAH17	Dynein heavy chain 17, axonemal isoform X1. (4448 aa)
	spata16	Spermatogenesis-associated protein 16 isoform X1. (610 aa)
	LOC106581727	Ropporin-1-like. (295 aa)
	LOC106578392	Sperm-associated antigen 6-like. (382 aa)
	LOC106562799	Mitochondrial sodium/hydrogen exchanger 9B2-like. (348 aa)
	ENSSSAP00000109942	annotation not available (134 aa)
	LOC106599672	Uncharacterized protein LOC106599672. (89 aa)
	qrich1	Glutamine-rich protein 1 isoform X1. (843 aa)
	ccdc62	Coiled-coil domain-containing protein 62 isoform X1. (1024 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNAH17	LOC106564280	ENSSSAP00000071859	ENSSSAP00000012208	Dynein heavy chain 17, axonemal isoform X1.	Tektin-4-like.	0.749
DNAH17	c2cd6	ENSSSAP00000071859	ENSSSAP00000026679	Dynein heavy chain 17, axonemal isoform X1.	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 11 protein isoform X1.	0.723
DNAH17	ccdc62	ENSSSAP00000071859	ENSSSAP00000117413	Dynein heavy chain 17, axonemal isoform X1.	Coiled-coil domain-containing protein 62 isoform X1.	0.766
DNAH17	spata16	ENSSSAP00000071859	ENSSSAP00000090765	Dynein heavy chain 17, axonemal isoform X1.	Spermatogenesis-associated protein 16 isoform X1.	0.796
ENSSSAP00000003574	ENSSSAP00000023369	ENSSSAP00000003574	ENSSSAP00000023369	annotation not available	Meiosis/spermiogenesis associated 1.	0.578
ENSSSAP00000003574	LOC106578392	ENSSSAP00000003574	ENSSSAP00000092431	annotation not available	Sperm-associated antigen 6-like.	0.593
ENSSSAP00000003574	meig1	ENSSSAP00000003574	ENSSSAP00000027978	annotation not available	Meiosis expressed gene 1 protein homolog.	0.578
ENSSSAP00000023369	ENSSSAP00000003574	ENSSSAP00000023369	ENSSSAP00000003574	Meiosis/spermiogenesis associated 1.	annotation not available	0.578
ENSSSAP00000023369	LOC106575691	ENSSSAP00000023369	ENSSSAP00000033286	Meiosis/spermiogenesis associated 1.	Ropporin-1-like.	0.526
ENSSSAP00000023369	LOC106578392	ENSSSAP00000023369	ENSSSAP00000092431	Meiosis/spermiogenesis associated 1.	Sperm-associated antigen 6-like.	0.581
ENSSSAP00000023369	LOC106581727	ENSSSAP00000023369	ENSSSAP00000091388	Meiosis/spermiogenesis associated 1.	Ropporin-1-like.	0.729
ENSSSAP00000023369	ropn1l	ENSSSAP00000023369	ENSSSAP00000053077	Meiosis/spermiogenesis associated 1.	Ropporin-1-like protein isoform X2.	0.526
ENSSSAP00000109942	LOC106581727	ENSSSAP00000109942	ENSSSAP00000091388	annotation not available	Ropporin-1-like.	0.442
LOC106562799	LOC106581727	ENSSSAP00000096962	ENSSSAP00000091388	Mitochondrial sodium/hydrogen exchanger 9B2-like.	Ropporin-1-like.	0.579
LOC106564280	DNAH17	ENSSSAP00000012208	ENSSSAP00000071859	Tektin-4-like.	Dynein heavy chain 17, axonemal isoform X1.	0.749
LOC106564280	LOC106584254	ENSSSAP00000012208	ENSSSAP00000044136	Tektin-4-like.	Uncharacterized protein LOC106584254 isoform X2.	0.408
LOC106564280	LOC106599672	ENSSSAP00000012208	ENSSSAP00000112183	Tektin-4-like.	Uncharacterized protein LOC106599672.	0.408
LOC106564280	LOC106614018	ENSSSAP00000012208	ENSSSAP00000031860	Tektin-4-like.	Uncharacterized protein LOC106614018.	0.408
LOC106564280	c2cd6	ENSSSAP00000012208	ENSSSAP00000026679	Tektin-4-like.	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 11 protein isoform X1.	0.723
LOC106564280	ccdc62	ENSSSAP00000012208	ENSSSAP00000117413	Tektin-4-like.	Coiled-coil domain-containing protein 62 isoform X1.	0.800