(33 nodes) Mixed, incl. Fox-1 C-terminal domain, and mRNA CDS binding network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106601965	RNA binding protein fox-1 homolog 1-like. (555 aa)
	LOC106601438	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (335 aa)
	rbfox3	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (504 aa)
	elavl2	ELAV-like protein; Belongs to the RRM elav family. (391 aa)
	rbpms	RNA-binding protein with multiple splicing. (193 aa)
	LOC106606043	RNA-binding protein 24-B-like. (128 aa)
	LOC100194721	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (380 aa)
	LOC106589218	RNA binding protein fox-1 homolog 2-like isoform X4. (471 aa)
	LOC106561796	Protein quaking-A isoform X1. (382 aa)
	LOC106577172	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (388 aa)
	ENSSSAP00000021569	annotation not available (128 aa)
	ENSSSAP00000021570	annotation not available (426 aa)
	ENSSSAP00000022354	annotation not available (128 aa)
	LOC106573600	Cold-inducible RNA-binding protein B-like isoform X3. (177 aa)
	LOC106588906	RNA-binding protein 24. (233 aa)
	LOC106577857	RNA-binding protein 4-like isoform X1. (656 aa)
	LOC106562415	Epithelial splicing regulatory protein 2-like isoform X1. (743 aa)
	ENSSSAP00000061457	annotation not available (128 aa)
	ENSSSAP00000062855	annotation not available (758 aa)
	rbm24	RNA-binding protein 24. (232 aa)
	LOC106607090	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (420 aa)
	LOC106607100	RNA binding protein fox-1 homolog 2-like isoform X1. (384 aa)
	qki	Protein quaking isoform X1. (342 aa)
	LOC106578914	Protein quaking-A-like isoform X2. (349 aa)
	LOC106613894	ELAV-like protein; Belongs to the RRM elav family. (452 aa)
	LOC106562790	RNA-binding protein with multiple splicing-like. (237 aa)
	rbm4	RNA-binding protein 4 isoform X1. (316 aa)
	rbpms-2	RNA-binding protein with multiple splicing-like. (201 aa)
	LOC106601175	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (195 aa)
	ENSSSAP00000115919	Protein quaking-A-like. (379 aa)
	LOC106584331	ELAV-like protein; Belongs to the RRM elav family. (455 aa)
	LOC106565805	RNA-binding protein 38-like. (240 aa)
	LOC106582916	RNA-binding protein 38-like isoform X1. (239 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000021569	LOC100194721	ENSSSAP00000021569	ENSSSAP00000009645	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.735
ENSSSAP00000021569	LOC106577172	ENSSSAP00000021569	ENSSSAP00000018129	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.710
ENSSSAP00000021569	LOC106577857	ENSSSAP00000021569	ENSSSAP00000057434	annotation not available	RNA-binding protein 4-like isoform X1.	0.421
ENSSSAP00000021569	LOC106584331	ENSSSAP00000021569	ENSSSAP00000117810	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.535
ENSSSAP00000021569	LOC106589218	ENSSSAP00000021569	ENSSSAP00000014444	annotation not available	RNA binding protein fox-1 homolog 2-like isoform X4.	0.638
ENSSSAP00000021569	LOC106601175	ENSSSAP00000021569	ENSSSAP00000115755	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.533
ENSSSAP00000021569	LOC106601438	ENSSSAP00000021569	ENSSSAP00000003005	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.438
ENSSSAP00000021569	LOC106601965	ENSSSAP00000021569	ENSSSAP00000000640	annotation not available	RNA binding protein fox-1 homolog 1-like.	0.529
ENSSSAP00000021569	LOC106607090	ENSSSAP00000021569	ENSSSAP00000066540	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.756
ENSSSAP00000021569	LOC106607100	ENSSSAP00000021569	ENSSSAP00000066819	annotation not available	RNA binding protein fox-1 homolog 2-like isoform X1.	0.533
ENSSSAP00000021569	LOC106613894	ENSSSAP00000021569	ENSSSAP00000075390	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.541
ENSSSAP00000021569	elavl2	ENSSSAP00000021569	ENSSSAP00000005216	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.562
ENSSSAP00000021569	rbfox3	ENSSSAP00000021569	ENSSSAP00000003393	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.434
ENSSSAP00000021570	rbpms	ENSSSAP00000021570	ENSSSAP00000005300	annotation not available	RNA-binding protein with multiple splicing.	0.590
ENSSSAP00000022354	LOC100194721	ENSSSAP00000022354	ENSSSAP00000009645	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.735
ENSSSAP00000022354	LOC106577172	ENSSSAP00000022354	ENSSSAP00000018129	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.710
ENSSSAP00000022354	LOC106577857	ENSSSAP00000022354	ENSSSAP00000057434	annotation not available	RNA-binding protein 4-like isoform X1.	0.421
ENSSSAP00000022354	LOC106584331	ENSSSAP00000022354	ENSSSAP00000117810	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.535
ENSSSAP00000022354	LOC106589218	ENSSSAP00000022354	ENSSSAP00000014444	annotation not available	RNA binding protein fox-1 homolog 2-like isoform X4.	0.638
ENSSSAP00000022354	LOC106601175	ENSSSAP00000022354	ENSSSAP00000115755	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.533