(12 nodes) mRNA CDS binding, and FOX1, RNA recognition motif network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbfox3	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (504 aa)
	elavl2	ELAV-like protein; Belongs to the RRM elav family. (391 aa)
	LOC106606043	RNA-binding protein 24-B-like. (128 aa)
	LOC100194721	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (380 aa)
	LOC106577172	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (388 aa)
	ENSSSAP00000021569	annotation not available (128 aa)
	ENSSSAP00000022354	annotation not available (128 aa)
	ENSSSAP00000061457	annotation not available (128 aa)
	LOC106607090	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (420 aa)
	LOC106613894	ELAV-like protein; Belongs to the RRM elav family. (452 aa)
	LOC106584331	ELAV-like protein; Belongs to the RRM elav family. (455 aa)
	LOC106565805	RNA-binding protein 38-like. (240 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000021569	LOC100194721	ENSSSAP00000021569	ENSSSAP00000009645	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.735
ENSSSAP00000021569	LOC106577172	ENSSSAP00000021569	ENSSSAP00000018129	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.710
ENSSSAP00000021569	LOC106584331	ENSSSAP00000021569	ENSSSAP00000117810	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.535
ENSSSAP00000021569	LOC106607090	ENSSSAP00000021569	ENSSSAP00000066540	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.756
ENSSSAP00000021569	LOC106613894	ENSSSAP00000021569	ENSSSAP00000075390	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.541
ENSSSAP00000021569	elavl2	ENSSSAP00000021569	ENSSSAP00000005216	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.562
ENSSSAP00000021569	rbfox3	ENSSSAP00000021569	ENSSSAP00000003393	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.434
ENSSSAP00000022354	LOC100194721	ENSSSAP00000022354	ENSSSAP00000009645	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.735
ENSSSAP00000022354	LOC106577172	ENSSSAP00000022354	ENSSSAP00000018129	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.710
ENSSSAP00000022354	LOC106584331	ENSSSAP00000022354	ENSSSAP00000117810	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.535
ENSSSAP00000022354	LOC106607090	ENSSSAP00000022354	ENSSSAP00000066540	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.756
ENSSSAP00000022354	LOC106613894	ENSSSAP00000022354	ENSSSAP00000075390	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.541
ENSSSAP00000022354	elavl2	ENSSSAP00000022354	ENSSSAP00000005216	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.562
ENSSSAP00000022354	rbfox3	ENSSSAP00000022354	ENSSSAP00000003393	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.434
ENSSSAP00000061457	LOC100194721	ENSSSAP00000061457	ENSSSAP00000009645	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.735
ENSSSAP00000061457	LOC106577172	ENSSSAP00000061457	ENSSSAP00000018129	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.710
ENSSSAP00000061457	LOC106584331	ENSSSAP00000061457	ENSSSAP00000117810	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.535
ENSSSAP00000061457	LOC106607090	ENSSSAP00000061457	ENSSSAP00000066540	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.756
ENSSSAP00000061457	LOC106613894	ENSSSAP00000061457	ENSSSAP00000075390	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.541
ENSSSAP00000061457	elavl2	ENSSSAP00000061457	ENSSSAP00000005216	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.562