(5 nodes) mRNA CDS binding, and FOX1, RNA recognition motif network (Salmo salar)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	elavl2	ELAV-like protein; Belongs to the RRM elav family. (391 aa)
	LOC100194721	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (380 aa)
	ENSSSAP00000021569	annotation not available (128 aa)
	ENSSSAP00000022354	annotation not available (128 aa)
	LOC106607090	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (420 aa)

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000021569	LOC100194721	ENSSSAP00000021569	ENSSSAP00000009645	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.735
ENSSSAP00000021569	LOC106607090	ENSSSAP00000021569	ENSSSAP00000066540	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.756
ENSSSAP00000021569	elavl2	ENSSSAP00000021569	ENSSSAP00000005216	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.562
ENSSSAP00000022354	LOC100194721	ENSSSAP00000022354	ENSSSAP00000009645	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.735
ENSSSAP00000022354	LOC106607090	ENSSSAP00000022354	ENSSSAP00000066540	annotation not available	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.756
ENSSSAP00000022354	elavl2	ENSSSAP00000022354	ENSSSAP00000005216	annotation not available	ELAV-like protein; Belongs to the RRM elav family.	0.562
LOC100194721	ENSSSAP00000021569	ENSSSAP00000009645	ENSSSAP00000021569	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	annotation not available	0.735
LOC100194721	ENSSSAP00000022354	ENSSSAP00000009645	ENSSSAP00000022354	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	annotation not available	0.735
LOC100194721	elavl2	ENSSSAP00000009645	ENSSSAP00000005216	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.511
LOC106607090	ENSSSAP00000021569	ENSSSAP00000066540	ENSSSAP00000021569	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	annotation not available	0.756
LOC106607090	ENSSSAP00000022354	ENSSSAP00000066540	ENSSSAP00000022354	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	annotation not available	0.756
LOC106607090	elavl2	ENSSSAP00000066540	ENSSSAP00000005216	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.594
elavl2	ENSSSAP00000021569	ENSSSAP00000005216	ENSSSAP00000021569	ELAV-like protein; Belongs to the RRM elav family.	annotation not available	0.562
elavl2	ENSSSAP00000022354	ENSSSAP00000005216	ENSSSAP00000022354	ELAV-like protein; Belongs to the RRM elav family.	annotation not available	0.562
elavl2	LOC100194721	ENSSSAP00000005216	ENSSSAP00000009645	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.511
elavl2	LOC106607090	ENSSSAP00000005216	ENSSSAP00000066540	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.594